Newcastle University

Publications

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• Hirt RP, Noel CJ, Sicheritz-Ponten T, Tachezy J, Fiori P-L. Trichomonas vaginalis surface proteins: a view from the genome. Trends in Parasitology 2007, 23(11), 540-547.
• Barre B, Perkins ND. A cell cycle regulatory network controlling NF-kappaB subunit activity and function. The EMBO Journal 2007, 26, 4841-4855.
• Frayling TM, Timpson NJ, Weedon MN, Zeggini E, Freathy RM, Lindgren CM, Perry JRB, Elliott KS, Lango H, Rayner NW, Shields B, Harries LW, Barrett JC, Ellard S, Groves CJ, Knight B, Patch A-M, Ness AR, Ebrahim S, Lawlor DA, Ring SM, Ben-Shlomo Y, Jarvelin M-R, Sovio U, Bennett AJ, Melzer D, Ferrucci L, Loos RJF, Barroso I, Wareham NJ, Karpe F, Owen KR, Cardon LR, Walker M, Hitman GA, Palmer CNA, Doney ASF, Morris AD, Smith GD, Hattersley AT, McCarthy MI. A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity. Science 2007, 316(5826), 889-894.
• McKeegan KS, Debieux CM, Boulon S, Bertrand E, Watkins NJ. A dynamic scaffold of pre-snoRNP factors facilitates human box C/D snoRNP assembly. Molecular and Cellular Biology 2007, 27(19), 6782-6793.
• Andersson JO, Sjogren AM, Horner DS, Murphy CA, Dyal PL, Svard SG, Logsdon Jr JM, Ragan MA, Hirt RP, Roger AJ. A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution. BMC Genomics 2007, 8(51).
• Levasseur M, Carroll M, Jones KJ, McDougall A. A novel mechanism controls the Ca2+ oscillations triggered by activation of ascidian eggs and has an absolute requirement for Cdk1 activity. Journal of Cell Science 2007, 120(10), 1763-1771.
• Waldron KJ, Tottey S, Yanagisawa S, Dennison C, Robinson NJ. A periplasmic iron-binding protein contributes toward inward copper supply. Journal of Biological Chemistry 2007, 282(6), 3837-3846.
• Thomas RM, Aldibbiat A, Griffin W, Cox MAA, Leech NJ, Shaw JAM. A randomized pilot study in type 1 diabetes complicated by severe hypoglycaemia, comparing rigorous hypoglycaemia avoidance with insulin analogue therapy, CSII or education alone. Diabetic Medicine 2007, 24(7), 778-783.
• Cheetham J, Smith DA, da Silva Dantas A, Doris KS, Patterson MJ, Bruce CR, Quinn J. A single MAPKKK regulates the Hog1 MAPK pathway in the pathogenic fungus Candida albicans. Molecular Biology of the Cell 2007, 18(11), 4603-4614.
• Susanna KA, Mironczuk AM, Smits WK, Hamoen LW, Kuipers OP. A single, specific thymine mutation in the ComK-binding site severely decreases binding and transcription activation by the competence transcription factor ComK of Bacillus subtilis. Journal of Bacteriology 2007, 189(13), 4718-4728.
• Brownlee IA, Knight J, Dettmar PW, Pearson JP. Action of reactive oxygen species on colonic mucus secretions. Free Radical Biology and Medicine 2007, 43(5), 800-808.
• Ross K, Whitaker M, Reynolds NJ. Agonist-induced calcium entry correlates with STIM1 translocation. Journal of Cellular Physiology 2007, 211(3), 569-576.
• Khor YH, Feltis BN, Reid DW, Ward C, Johns DP, Wood-Baker R, Walters EH. Airway cell and cytokine changes in early asthma deterioration after inhaled corticosteroid reduction. Clinical and Experimental Allergy 2007, 37(8), 1189-1198.
• Wood CD, Nishigaki T, Tatsu Y, Yumoto N, Baba SA, Whitaker M, Darszon A. Altering the speract-induced ion permeability changes that generate flagellar Ca2+ spikes regulates their kinetics and sea urchin sperm motility. Developmental Biology 2007, 306(2), 525-537.
• Sergeant KA, Bourgeois CF, Dalgliesh C, Venables JP, Stevenin J, Elliott DJ. Alternative RNA splicing complexes containing the scaffold attachment factor SAFB2. Journal of Cell Science 2007, 120(2), 309-319.
• Mackay LS, Pinnion K, Bolton S, Ward C, Lordan J, Fisher AJ, Foster M, Corris PA. Alveolar septae in severe end-stage emphysema show morphological evidence of dysregulated mesenchymal cell proliferation and loss of microvascularity. In: British Thoracic Society Winter 2007 Meeting. 2007, London: Thorax: BMJ Publishing Group.
• Weatherhead S, Wahie S, Reynolds NJ, Meggitt SJ. An open-label, dose-ranging study of methotrexate for moderate-to-severe adult atopic eczema. British Journal of Dermatology 2007, 156(2), 346-351.
• Lecointe F, Serena C, Velten M, Costes A, McGovern S, Meile J-C, Errington J, Ehrlich SD, Noirot P, Polard P. Anticipating chromosomal replication fork arrest: SSB targets repair DNA helicases to active forks. EMBO Journal 2007, 26(19), 4239-4251.
• Smits WK, Hoa TT, Hamoen LW, Kuipers OP, Dubnau D. Antirepression as a second mechanism of transcriptional activation by a minor groove binding protein. Molecular Microbiology 2007, 64(2), 368-381.
• van Schothorst EM, Pagmantidis V, de Boer VCJ, Hesketh J, Keijer J. Assessment of reducing RNA input for Agilent oligo microarrays. Analytical Biochemistry 2007, 363(2), 315-317.
• Sayer J, Hogg P. Biochemical abnormalities in renal stone formers attending for lithotripsy. In: XLIV Congress of the European Renal Association European Dialysis and Transplant Association (ERA-EDTA). 2007, Barcelona, Spain: OXFORD UNIV PRESS.
• McComb CM, Clark EL, Padget K, Harvey J, Morris NJ, Austin CA. Bioinformatic analysis of topoisomerase II binding sites. In: 30th Annual Meeting of the United Kingdom Environmental Mutagen Society. 2007, University of Cardiff, UK: Mutagenesis: Oxford University Press.
• Li D, Karess R, Whitaker M, Huang J-Y. BubR1, but not Mad2, is required for recruiting and localizing of Fzy to the kinetochores in D. melanogaster. In: 48th Annual Drosophila Research Conference. 2007, Philadelphia, Pennsylvania: The Genetics Society of America.
• Huang J-Y, Morley G, Li D, Whitaker M. Cdk1 phosphorylation sites on Cdc27 are required for correct chromosomal localisation and APC/C function in syncytial Drosophila embryos. Journal of Cell Science 2007, 120(12), 1990-1997.
• Arden C, Trainer A, De La Iglesia N, Scougall KT, Gloyn AL, Lange AJ, Shaw J, Matschinsky FM, Agius L. Cell biology assessment of glucokinase mutations V62M and G72R in pancreatic β-cells: Evidence for cellular instability of catalytic activity. Diabetes 2007, 56(7), 1773-1782.
• López-Lázaro, M., Willmore, E., Austin, C. A. Cells lacking DNA topoisomerase IIβ are resistant to genistein. Journal of Natural Products 2007, 70(5), 763-767.
• Gilbert HJ. Cellulosomes: Microbial nanomachines that display plasticity in quaternary structure. Molecular Microbiology 2007, 63(6), 1568-1576.
• Ringgaard S, Lowe J, Gerdes K. Centromere pairing by a plasmid-encoded type I ParB protein. Journal of Biological Chemistry 2007, 282(38), 28216-28225.
• Riddoch, F.C., Brown, A.M., Rowbotham, S.E., Redfern, C.P.F., Cheek, T.R. Changes in functional properties of the caffeine-sensitive Ca2+ store during differentiation of human SH-SY5Y neuroblastoma cells. Cell Calcium 2007, 41(3), 195-206.
• Nijland R, Heerlien R, Hamoen LW, Kuipers OP. Changing a single amino acid in Clostridium perfringens β-toxin affects the efficiency of heterologous secretion by Bacillus subtilis. Applied and Environmental Microbiology 2007, 73(5), 1586-1593.
• Clarke N, Heer R, Cheek T, Leung T, Pickard R. Changing the phenotype of urethral stroma by treatment with transforming growth factor beta-3. European Urology Supplements 2007, 6(2), 138-138.
• Nagy T, Tunnicliffe RB, Higgins LD, Walters C, Gilbert HJ, Williamson MP. Characterization of a Double Dockerin from the Cellulosome of the Anaerobic Fungus Piromyces equi. Journal of Molecular Biology 2007, 373(3), 612-622.
• Nielsen SU, Bossendine M, King BJ, Neely D, Toms GL, Liver Research Group. Characterization of hepatitis C RNA containing particles from human liver by density and morphology. In: 58th Annual Meeting of the American Association for the Study of Liver Diseases. 2007, Boston, MA: Hepatology, John Wiley.
• Nielsen S, Bassendine M, Neely D, Ibrahim S, Toms G. Characterization of hepatitis C virus associated with very low density lipoprotein (VLDL) in infected human serum and liver. In: 21st Annual Medical and Scientific Meeting of HEART UK. 2007, Edinburgh, Scotland: Atherosclerosis, Elsevier.
• Valbuena N, Letek M, Ordonez E, Ayala J, Daniel RA, Gil JA, Mateos LM. Characterization of HMW-PBPs from the rod-shaped actinomycete Corynebacterium glutamicum: Peptidoglycan synthesis in cells lacking actin-like cytoskeletal structures. Molecular Microbiology 2007, 66(3), 643-657.
• Nichols CE, Lamb HK, Lockyer M, Charles IG, Pyne S, Hawkins AR, Stammers DK. Characterization of Salmonella typhimurium YegS, a putative lipid kinase homologous to eukaryotic sphingosine and diacylglycerol kinases. Proteins: Structure, Function and Genetics 2007, 68(1), 13-25.
• Ng W, Sergeyenko T, Zeng N, Brown JD, Römisch K. Characterization of the proteasome interaction with the Sec61 channel in the endoplasmic reticulum. Journal of Cell Science 2007, 120(4), 682-691.
• Pascoe L, Tura A, Patel SK, Ibrahim IM, Ferrannini E, Zeggini E, Weedon MN, Mari A, Hattersley AT, McCarthy MI, Frayling TM, Walker M. Common variants of the novel type 2 diabetes genes CDKAL1 and HHEX/IDE are associated with decreased pancreatic β-cell function. Diabetes 2007, 56(12), 3101-3104.
• Weir KS, Tharia H, Hitchcock T, Lakey JH. Critical factors in the in vitro refolding pathway of IFN-alpha 2b. Biophysical Journal 2007, 399A-399A.
• Xu L, Sedelnikova SE, Baker PJ, Hunt A, Errington J, Rice DW. Crystal structure of S. aureus YlaN, an essential leucine rich protein involved in the control of cell shape. Proteins: Structure, Function and Genetics 2007, 68(2), 438-445.
• López-Lázaro M, Willmore E, Jobson AG, Gilroy KL, Curtis H, Padget K, Austin CA. Curcumin induces high levels of topoisomerase I- and II-DNA complexes in K562 leukemia cells. Journal of Natural Products 2007, 70(12), 1884-1888.
• Thwaites DT, Anderson CMH. Deciphering the mechanisms of intestinal imino (and amino) acid transport: The redemption of SLC36A1. Biochimica et Biophysica Acta: Biomembranes 2007, 1768(2), 179-197.
• Whittaker RG, Schaefer AM, McFarland R, Taylor RW, Walker M, Turnbull DM. Diabetes and deafness: Is it sufficient to screen for the mitochondrial 3243A>G mutation alone?. Diabetes Care 2007, 30(9), 2238-2239.
• Crosley LK, Meplan C, Nicol F, Rundlof AK, Arner ESJ, Hesketh JE, Arthur JR. Differential regulation of expression of cytosolic and mitochondrial thioredoxin reductase in rat liver and kidney. Archives of Biochemistry and Biophysics 2007, 459(2), 178-188.
• Leontiou C, Watters GP, Gilroy KL, Heslop P, Cowell IG, Craig K, Lightowlers RN, Lakey JH, Austin CA. Differential selection of acridine resistance mutations in human DNA topoisomerase II beta is dependent on the acridine structure. Molecular Pharmacology 2007, 71(4), 1006-1014.
• Kirmizidis G, Lakey JH, Birch MA. Differential vascular endothelial growth factor receptor expression during osteogenesis. Journal of Bone and Mineral Research 2007, 22(7), 1128-1128.
• van Nues RW, Brown JD. Distant Segments of Saccharomyces cerevisiae scR1 RNA Promote Assembly and Function of the Signal Recognition Particle. Journal of Molecular Biology 2007, 368(3), 677-690.
• Dong L, Hollis T, Connolly BA, Wright NG, Horrocks BR, Houlton A. DNA-templated semiconductor nanoparticle chains and wires. Advanced Materials 2007, 19(13), 1748-1751.
• Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UCM, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, Van De Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Muller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu C-L, Osoegawa K, De Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik S-B, Logsdon Jr JM, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu C-H, Lee Y-S, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science 2007, 315(5809), 207-212.
• Murphy DM, Forrest IA, Ward C, Corris PA, Johnson GE, Jones D, Fisher AJ, Egan JJ, Cawston TE, Lordan JL. Effect of azithromycin on primary bronchial epithelial cells derived from stable lung allografts. Thorax 2007, 62(9), 833.
• Feltis BN, Wignarajah D, Reid DW, Ward C, Harding R, Walters EH. Effects of inhaled fluticasone on angiogenesis and vascular endothelial growth factor in asthma. Thorax 2007, 62(4), 314-319.
• Lie LH, Mirkin MV, Hakkarainen S, Houlton A, Horrocks BR. Electrochemical detection of lateral charge transport in metal complex-DNA monolayers synthesized on Si(1 1 1) electrodes. Journal of Electroanalytical Chemistry 2007, 603(1), 67-80.
• Mudashiru LK, Horrocks BR, Aplin AC. Emerging methods for insitu monitoring of iron speciation in polluted minewaters, NE, England. In: Analytical Research Forum. 2007, University of Strathclyde, Glasgow, UK.
• Li C, Banfield MJ, Dennison C. Engineering copper sites in proteins: Loops confer native structures and properties to chimeric cupredoxins. Journal of the American Chemical Society 2007, 129(3), 709-718.
• Ruchaud-Sparagano MH, Maresca M, Kenny B. Enteropathogenic Escherichia coli (EPEC) inactivate innate immune responses prior to compromising epithelial barrier function. Cellular Microbiology 2007, 9(8), 1909-1921.
• Thomaides HB, Davison EJ, Burston L, Johnson H, Brown DR, Hunt AC, Errington J, Czaplewski L. Essential bacterial functions encoded by gene pairs. Journal of Bacteriology 2007, 189(2), 591-602.
• Chao Y, Siller L, Krishnamurthy S, Coxon PR, Bangert U, Gass M, Kjeldgaard L, Patole SN, Lie LH, O'Farrell N, Alsop TA, Houlton A, Horrocks BR. Evaporation and deposition of alkyl-capped silicon nanocrystals in ultrahigh vacuum. Nature Nanotechnology 2007, 2(8), 486-489.
• Bermano G, Pagmantidis V, Holloway N, Kadri S, Mowat NAG, Shiel RS, Arthur JR, Mathers JC, Daly AK, Broom J, Hesketh JE. Evidence that a polymorphism within the 3'UTR of glutathione peroxidase 4 is functional and is associated with susceptibility to colorectal cancer. Genes and Nutrition 2007, 2(2), 225-232.
• Sun Y, Wipat A, Pocock M, Lee PA, Flanagan K, Worthington JT. Exploring microbial genome sequences to identify protein families on the grid. IEEE Transactions on Information Technology in Biomedicine 2007, 11(4), 435-442.
• Ball SL, Siou GP, Wilson JA, Howard A, Hirst BH, Hall J. Expression and immunolocalisation of antimicrobial peptides within human palatine tonsils. Journal of Laryngology and Otology 2007, 121(10), 973-978.
• Carr G, Sayer JA, Simmons NL. Expression and localisation of the pyrophosphate transporter, ANK, in murine kidney cells. Cellular Physiology and Biochemistry 2007, 20(5), 507-516.
• Werner A, Schmutzler G, Carlile M, Miles CG, Peters H. Expression profiling of antisense transcripts on DNA arrays. Physiological Genomics 2007, 28(3), 294-300.
• Linley JE, Simmons NL, Gray MA. Extracellular zinc stimulates a calcium-activated chloride conductance through mobilisation of intracellular calcium in renal inner medullary collecting duct cells. Pflugers Archiv European Journal of Physiology 2007, 453(4), 487-495.
• Lamb HK, Thompson P, Elliott C, Charles IG, Richards J, Lockyer M, Watkins N, Nichols C, Stammers DK, Bagshaw CR, Cooper A, Hawkins AR. Functional analysis of the GTPases EngA and YhbZ encoded by Salmonella typhimurium. Protein Science 2007, 16(11), 2391-2402.
• Wakeling L, Ford D. Genetic influences on interindividual variability in soybean isoflavone absorption and metabolism. In: International Research Conference on Food, Nutrition, and Cancer. 2007, Washington, DC: Journal of Nutrition, American Society for Nutrition.
• Meplan C, Crosley LK, Nicol F, Beckett GJ, Howie AF, Hill KE, Horgan G, Mathers JC, Arthur JR, Hesketh JE. Genetic polymorphisms in the human selenoprotein P gene determine the response of selenoprotein markers to selenium supplementation in a gender-specific manner (the SELGEN study). FASEB Journal 2007, 21(12), 3063-3074.
• Young AH, Ferrier IN, Ball SG, Mohiuddin MK, Todhunter CE, Mansfield JC, members of the Wellcome Trust Case Control Consortium. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 2007, 447(7145), 661-678.
• Dacks B, Liapounova NA, Hampl V, Hirt RP, Embley TM, Gedamu L. Golgi-associated genes in the oxymonad Monocercomonoides sp suggest the presence of a cryptic organelle. Journal of Eukaryotic Microbiology 2007, 54(2), 38S-38S.
• Thwaites DT, Anderson CMH. H⁺-coupled nutrient, micronutrient and drug transporters in the mammalian small intestine. Experimental Physiology 2007, 92(4), 603-619.
• Aisenbrey C, Sudheendra US, Ridley H, Bertani P, Marquette A, Nedelkina S, Lakey JH, Bechinger B. Helix orientations in membrane-associated Bcl-XL determined by 15N-solid-state NMR spectroscopy. European Biophysics Journal 2007, 37(1), 71-80.
• Nijland R, Lindner C, van Hartskamp M, Hamoen LW, Kuipers OP. Heterologous production and secretion of Clostridium perfringens beta-toxoid in closely related Gram-positive hosts. Journal of Biotechnology 2007, 127(3), 361-72.
• Rorbach J, Soleimanpour-Lichaei R, Lightowlers RN, Chrzanowska-Lightowlers ZMA. How do mammalian mitochondria synthesize proteins?. In: Biochemical Society Transactions: Focus Topics at Life Sciences. 2007, Glasgow, UK: Portland Press Ltd.
• Veal EA, Day AM, Morgan BA. Hydrogen Peroxide Sensing and Signaling. Molecular Cell 2007, 26(1), 1-14.
• Lister AL, Jones AR, Pocock M, Shaw O, Wipat A. Implementing the FuGE Object Model: a Systems Biology Data Portal and Integrator. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2007. School of Computing Science Technical Report Series 1016.
• Ratanamart J, Huggins CG, Kirby JA, Shaw J. In vitro and in vivo evaluation of intrinsic immunogenicity of reporter and insulin gene therapy plasmids. Journal of Gene Medicine 2007, 9(8), 703-714.
• Hampton PJ, Ross OK, Reynolds NJ. Increased nuclear β-catenin in suprabasal involved psoriatic epidermis. British Journal of Dermatology 2007, 157(6), 1168-1177.
• Velarde M, Huber R, Yanagisawa S, Dennison C, Messerschmidt A. Influence of loop shortening on the metal binding site of cupredoxin pseudoazurin. Biochemistry 2007, 46(35), 9981-9991.
• Ferrannini E, Balkau B, Coppack SW, Dekker JM, Mari A, Nolan J, Walker M, Natali A, Beck-Nielsen H, Heine RJ, Dekker J, Nijpels G, Boorsma W, Mitrakou A, Tournis S, Kyriakopoulou K, Thomakos P, Lalic N, Lalic K, Jotic A, Lukic L, Civcic M, Yeow TP, Murphy M, DeLong C, Neary G, Colgan MP, Hatunic M, Konrad T, Bohles H, Fuellert S, Baer F, Zuchhold H, Golay A, Harsch Bobbioni E, Barthassat V, Makoundou V, Lehmann TNO, Merminod T, Petrie JR, Perry C, Neary F, Mac-Dougall C, Shields K, Malcolm L, Laakso M, Salmenniemi U, Aura A, Raisanen R, Ruotsalainen U, Sistonen T, Laitinen M, Saloranta H, McIntosh N, Khadobaksh P, Laville M, Bonnet F, De La Perriere AB, Louche-Pelissier C, Maitrepierre C, Peyrat J, Serusclat A, Gabriel R, Sanchez EM, Carraro R, Friera A, Novella B, Nilsson P, Persson M, Ostling G, Melander O, Burri P, Piatti PM, Monti LD, Setola E, Galluccio E, Minicucci F, Colleluori A, Ibrahim IM, Jayapaul M, Carman D, Short K, McGrady Y, Richardson D, Staehr P, Hojlund K, Vestergaard V, Olsen C, Hansen L, Bolli GB, Porcellati F, Fanelli C, Lucidi P, Calcinaro F, Saturni A, Muscelli E, Pinnola S, Kozakova M, Mingrone G, Guidone C, Favuzzi A, Di Rocco P, Anderwald C, Bischof M, Promintzer M, Krebs M, Mandl M, Hofer A, Luger A, Waldhausl W, Roden M, Gaffney P, Boran G, Kok A, Patel S, Gastaldelli A, Ciociaro D, Kozakova M, Guillanneuf MT, Mhamdi L, Pacini G, Cavaggion C, Hills SA, Landucci L, Mota L. Insulin resistance, insulin response, and obesity as indicators of metabolic risk. Journal of Clinical Endocrinology and Metabolism 2007, 92(8), 2885-2892.
• Perkins ND. Integrating cell-signalling pathways with NF-kappaB and IKK function. Nature Reviews Molecular Cell Biology 2007, 8(1), 49-62.
• Lister AL, Pocock M, Wipat A. Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models. Journal of Integrative Bioinformatics 2007, 4(3), 80.
• Lister A L, Pocock M, Wipat A. Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2007. School of Computing Science Technical Report Series 1043.
• Gill S, O'Neill R, Lewis RJ, Connolly BA. Interaction of the family-B DNA polymerase from the archaeon Pyrococcus furiosus with deaminated bases. Journal of Molecular Biology 2007, 372(4), 855-863.
• Watkins NJ, Lemm I, Luhrmann R. Involvement of nuclear import and export factors in U8 box C/D snoRNP biogenesis. Molecular and Cellular Biology 2007, 27(20), 7018-7027.
• Watters GP, Harvey JS, Austin CA. Is H2AX phosphorylation a biomarker for genotoxicity?. In: Mutagenesis: 30th Annual Meeting of the United Kingdom Environmental Mutagen Society. 2007, University of Cardiff, UK: Oxford University Press.
• Cowell I, Sunter NJ, Singh PB, Austin CA, Durkacz BW, Tilby MJ. γH2AX foci form preferentially in euchromatin after ionising-radiation. PLoS ONE 2007, 2(10), e1057.
• Pickersgill L, Litherland GJ, Greenberg AS, Walker M, Yeaman SJ. Key role for ceramides in mediating insulin resistance in human muscle cells. Journal of Biological Chemistry 2007, 282(17), 12583-12589.
• Attanasio M, Uhlenhaut NH, Sousa VH, O'Toole JF, Otto E, Anlag K, Klugmann C, Treier AC, Helou J, Sayer JA, Seelow D, Nürnberg G, Becker C, Chudley AE, Nürnberg P, Hildebrandt F, Treier M. Loss of GLIS2 causes nephronophthisis in humans and mice by increased apoptosis and fibrosis. Nature Genetics 2007, 39(8), 1018-1024.
• Tailford LE, Money VA, Smith NL, Dumon C, Davies GJ, Gilbert HJ. Mannose foraging by Bacteroides thetaiotaomicron: Structure and specificity of the β-mannosidase, BtMan2A. Journal of Biological Chemistry 2007, 282(15), 11291-11299.
• Chinnery PF, Mowbray C, Patel SK, Elson JL, Sampson M, Hitman GA, McCarthy MI, Hattersley AT, Walker M. Mitochondrial DNA haplogroups and type 2 diabetes: a study of 897 cases and 1010 controls. Journal of Medical Genetics 2007, 44(6), e80.
• Proctor CJ, Lydall D, Boys RJ, Gillespie CS, Shanley D, Wilkinson DJ, Kirkwood TBL. Modelling the checkpoint response to telomere uncapping in budding yeast. Journal of the Royal Society Interface 2007, 4(12), 73-90.
• Hallinan JS, Wipat A. Motifs and modules in fractured functional yeast networks. In: IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 07). 2007, Honolulu, Hawaii: IEEE.
• Tsolou A, Lydall D. Mrc1 protects uncapped budding yeast telomeres from exonuclease EXO1. DNA Repair 2007, 6(11), 1607-1617.
• Soleimanpour-Lichaei HR, Kuhl I, Gaisne M, Passos JF, Wydro M, Rorbach J, Temperley R, Bonnefoy N, Tate W, Lightowlers R, Chrzanowska-Lightowlers Z. mtRF1a Is a Human Mitochondrial Translation Release Factor Decoding the Major Termination Codons UAA and UAG. Molecular Cell 2007, 27(5), 745-757.
• Ali MS, Wilson JA, Bennett MK, Pearson JP. Mucin gene expression in hypertrophic adenoids. Acta Oto-Laryngologica 2007, 127(10), 1080-1085.
• Helou J, Otto EA, Attanasio M, Allen SJ, Parisi MA, Glass I, Utsch B, Hashmi S, Fazzi E, Omran H, O'Toole JF, Sayer JA, Hildebrandt F. Mutation analysis of NPHP6/CEP290 in patients with Joubert syndrome ana Senior-Løken syndrome. Journal of Medical Genetics 2007, 44(10), 657-663.
• Wolf MTF, Saunier S, O'Toole JF, Wanner N, Groshong T, Attanasio M, Salomon R, Stallmach T, Sayer JA, Waldherr R, Griebel M, Oh J, Neuhaus TJ, Josefiak U, Antignac C, Otto EA, Hildebrandt F. Mutational analysis of the RPGRIP1L gene in patients with Joubert syndrome and nephronophthisis. Kidney International 2007, 72(12), 1520-1526.
• Campbell DR, Chapman KE, Waldron KJ, Tottey S, Kendall S, Cavallaro G, Andreini C, Hinds J, Stoker NG, Robinson NJ, Cavet JS. Mycobacterial cells have dual nickel-cobalt sensors: Sequence relationships and metal sites of metal-responsive repressors are not congruent. Journal of Biological Chemistry 2007, 282(44), 32298-32310.
• Banci L, Bertini I, Cantini F, Ciofi-Baffoni S, Cavet JS, Dennison C, Graham AI, Harvie DR, Robinson NJ. NMR structural analysis of cadmium sensing by winged helix repressor CmtR. Journal of Biological Chemistry 2007, 282(41), 30181-30188.
• Walters EH, Reid DW, Johns DP, Ward C. Nonpharmacological and pharmacological interventions to prevent or reduce airway remodelling. European Respiratory Journal 2007, 30(3), 574-588.
• Duitman EH, Wyczawski D, Boven LG, Venema G, Kuipers OP, Hamoen LW. Novel methods for genetic transformation of natural Bacillus subtilis isolates used to study the regulation of the mycosubtilin and surfactin synthetases. Applied and Environmental Microbiology 2007, 73(11), 3490-3496.
• Barker JNWN, Palmer CNA, Zhao Y, Liao H, Hull PR, Lee SP, Allen MH, Meggitt SJ, Reynolds NJ, Trembath RC, McLean WHI. Null mutations in the filaggrin gene (FLG) determine major susceptibility to early-onset atopic dermatitis that persists into adulthood. Journal of Investigative Dermatology 2007, 127(3), 564-567.
• Wilkinson M, McInerney JO, Hirt RP, Foster PG, Embley TM. Of clades and clans: terms for phylogenetic relationships in unrooted trees. Trends in Ecology and Evolution 2007, 22(3), 114-115.
• Fong P, Gray MA. Orchestration of vectorial chloride transport by epithelia. In: Pusch, M, ed. Chloride Movements Across Cellular Membranes. London: Elsevier Science, 2007, pp.329-368.
• Gorowiec MR, Parker SM, Borthwick LA, Ward C, Lordan J, Saretzki GC, Corris PA, Kirby JA, Fisher AJ. Oxidative stress increases transforming growth factor-beta expression and drives epithelial to mesenchymal transition in human lung epithelial cells. In: Winter Meeting of the British Thoracic Society. 2007, London, England: BMJ Group.
• Tergaonkar V, Perkins ND. p53 and NF-κB crosstalk: IKKα tips the balance. Molecular Cell 2007, 26(2), 158-159.
• Stovold R, Forrest IA, Corris PA, Murphy DM, Smith JA, Decalmer S, Johnson GE, Dark JH, Pearson JP, Ward C. Pepsin, a biomarker of gastric aspiration in lung allografts: a putative association with rejection. American Journal of Respiratory and Critical Care Medicine 2007, 175(12), 1298-303.
• Stovold R, Forrest IA, Corris PA, Murphy DM, Smith JA, Decalmer S, Johnson GE, Dark JH, Pearson JP, Ward C. Pepsin, a biomarker of gastric aspiration in lung allografts: A putative association with rejection. American Journal of Respiratory and Critical Care Medicine 2007, 175(12), 1298-1303.
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