Newcastle University

Publications

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• Choudhary M, Zhang X, Lako M, Stojkovic M, Murdoch A. "Beauty and Beast" molecule: HA in early human development. BJOG 2009, 116(10), 1408.
• Rollason R, Korolchuk V, Hamilton C, Jepson M, Banting G. A CD317/tetherin–RICH2 complex plays a critical role in the organization of the subapical actin cytoskeleton in polarized epithelial cells. Journal of Cell Biology 2009, 184(5), 721-736.
• Whittaker RG, Turnbull DM. A diagnostic tattoo. Clinical Genetics 2009, 75(1), 37-38.
• McAuley MT, Kenny RA, Kirkwood TBL, Wilkinson DJ, Jones JJL, Miller VM. A mathematical model of aging-related and cortisol induced hippocampal dysfunction. BMC Neuroscience 2009, 10(1), 26.
• Fellous TG, McDonald SAC, Burkert J, Humphries A, Islam S, De-Alwis NMW, Gutierrez-Gonzalez L, Tadrous PJ, Elia G, Kocher HM, Bhattacharya S, Mears L, El-Bahrawy M, Turnbull DM, Taylor RW, Greaves LC, Chinnery PF, Day CP, Wright NA, Alison MR. A Methodological Approach to Tracing Cell Lineage in Human Epithelial Tissues. Stem Cells 2009, 27(6), 1410-1420.
• Hesketh JE, Lietz G. A network approach to micronutrient genetics: interactions with lipid metabolism. Current Opinion in Lipidology 2009, 20(2), 112-120.
• Blakely EL, Trip SA, Swalwell H, He LP, Wren DR, Rich P, Turnbull DM, Omer SE, Taylor RW. A New Mitochondrial Transfer RNA(Pro) Gene Mutation Associated With Myoclonic Epilepsy With Ragged-Red Fibers and Other Neurological Features. Archives of Neurology 2009, 66(3), 399-402.
• Korolchuk VI, Menzies FM, Rubinsztein DC. A novel link between autophagy and the ubiquitin-proteasome system. Autophagy 2009, 5(6), 862-863.
• Lakey RL, Morgan TG, Rowan AD, Isaacs JD, Cawston TE, Hilkens CM. A novel paradigm for dendritic cells as effectors of cartilage destruction. Rheumatology 2009, 48(5), 502-7.
• Zhang X, Neganova I, Przyborski S, Yang CB, Cooke M, Atkinson SP, Anyfantis G, Fenyk S, Keith WN, Hoare SF, Hughes O, Strachan T, Stojkovic M, Hinds PW, Armstrong L, Lako M. A role for NANOG in G1 to S transition in human embryonic stem cells through direct binding of CDK6 and CDC25A. Journal of Cell Biology 2009, 184(1), 67-82.
• Betts-Henderson J, Jaros E, Krishnan KJ, Perry RH, Reeve AK, Schaefer AM, Taylor RW, Turnbull DM. Alpha-synuclein pathology and Parkinsonism associated with POLG1 mutations and multiple mitochondrial DNA deletions. Neuropathology and Applied Neurobiology 2009, 35(1), 120-124.
• Jackson KA, Valentine RA, Mckay JA, Swan DC, Mathers JC, Ford D. Analysis of differential gene-regulatory responses to zinc in human intestinal and placental cell lines. British Journal of Nutrition 2009, 101(10), 1474-1483.
• Gutierrez-Gonzalez L, Deheragoda M, Elia G, Leedham SJ, Shankar A, Imber C, Jankowski JA, Turnbull DM, Novelli M, Wright NA, McDonald SA. Analysis of the clonal architecture of the human small intestinal epithelium establishes a common stem cell for all lineages and reveals a mechanism for the fixation and spread of mutations. Journal of pathology 2009, 217(4), 489-496.
• Lister AL, Lord P, Pocock M, Wipat A. Annotation of SBML Models Through Rule-Based Semantic Integration. In: 12th Annual Bio-Ontologies Meeting colocated with ISMB. 2009, Stockholm, Sweden: Intelligent Systems for Molecular Biology.
• Burn J, Gerdes AM, Mathers J, Mecklin JP, Macrae F, Moeslein G, Bisgaard ML, Ramesar R, Eccles D, Maher ER, Evans G, Morrison P, Bishop DT. Aspirin prevents cancer in Lynch syndrome. In: Journal of Medical Genetics: British Human Genetics Conference. 2009, University of Warwick, UK: BMJ Group.
• Burn J, Gerdes AM, Mecklin JP, Macrae F, Moeslein G, Bisgaard ML, Ramesar R, Eccles DT, Mathers JC, Bishop DT. Aspirin prevents cancer in Lynch syndrome. In: European Journal of Cancer Supplements: 15th Congress of the European Cancer Organization. 2009, Berlin, Germany: Pergamon.
• Wilkins JM, Southam L, Mustafa Z, Chapman K, Loughlin J. Association of a functional microsatellite within intron 1 of the BMP5 gene with susceptibility to osteoarthritis. BMC Medical Genetics 2009, 10, 141.
• Rodriguez-Lopez J, Pombo-Suarez M, Loughlin J, Tsezou A, Blanco FJ, Meulenbelt I, Slagboom PE, Valdes AM, Spector TD, Gomez-Reino JJ, Gonzalez A. Association of a nsSNP in ADAMTS14 to some osteoarthritis phenotypes. Osteoarthritis and Cartilage 2009, 17(3), 321-327.
• Domínguez-Garrido E, Martínez-Redondo D, Martín-Ruiz C, Gómez-Durán A, Ruiz-Pesini E, Madero P, Tamparillas M, Montoya J, von Zglinicki T, Díez-Sánchez C, López-Pérez M. Association of mitochondrial haplogroup J and mtDNA oxidative damage in two different North Spain elderly populations. Biogerontology 2009, 10(4), 435-442.
• Korolchuk VI, Mansilla A, Menzies FM, Rubinsztein DC. Autophagy Inhibition Compromises Degradation of Ubiquitin-Proteasome Pathway Substrates. Molecular Cell 2009, 33(4), 517-527.
• Lako M, Daher S. Balancing Work and Life: A Conversation with Barbara Knowles. Stem Cells 2009, 27(5), 989-990.
• Lako M, Daher S. Balancing Work and Life: A Conversation with Fiona Watt. Stem Cells 2009, 27(4), 762-763.
• Lako M, Daher S. Balancing Work and Life: A Conversation with George Daley. Stem Cells 2009, 27(7), 1469-1470.
• Lako M, Daher S. Balancing Work and Life: A Conversation with Konrad Hochedlinger. Stem Cells 2009, 27(5), 991-992.
• Lako M, Daher S. Balancing Work and Life: A Conversation with Lesley Forrester. Stem Cells 2009, 27(8), 1707-1708.
• Lako M, Daher S. Balancing Work and Life: A Conversation with Marella de Bruijn. Stem Cells 2009, 27(7), 1471-1472.
• Lako M, Daher S. Balancing Work and Life: A Conversation with Margaret "Peggy" Goodell. Stem Cells 2009, 27(6), 1227-1228.
• Lako M, Daher S. Balancing Work and Life: A Conversation with Mina Bissell. Stem Cells 2009, 27(8), 1709-1711.
• Lako M, Daher S. Balancing Work and Life: A Conversation with Sean Morrison. Stem Cells 2009, 27(6), 1229-1230.
• Lako M, Daher S. Balancing Work and Life: An Interview with Connie Eaves. Stem Cells 2009, 27(9), 2056-2058.
• Lako M, Daher S. Balancing Work and Life: An Interview with Kathleen Sakamoto. Stem Cells 2009, 27(9), 2053-2055.
• Lako M, Daher S. Balancing Work and Life: Finding Our Inspirations. Stem Cells 2009, 27(4), 761-761.
• McFarland R, Turnbull DM. Batteries not included: diagnosis and management of mitochondrial disease. Journal of Internal Medicine 2009, 265(2), 210-228.
• Henderson DA, Boys RJ, Krishnan KJ, Lawless C, Wilkinson DJ. Bayesian emulation and calibration of a stochastic computer model of mitochondrial DNA deletions in substantia nigra neurons. Journal of the American Statistical Association 2009, 104(485), 76-87.
• Golightly A. Bayesian Filtering for Jump-Diffusions With Application to Stochastic Volatility. Journal of Computational and Graphical Statistics 2009, 18(2), 384-400.
• Hanson PS, Hiscock DRR, Morris CM, Thomas AJ. Biomarkers For Depression. GB: GE Healthcare Limited, PCT/EP2009/055943, 15/05/2009.
• Ions L, Wakeling L, Ford D. Can soyabean isoflavones mimic the effects of energy restriction on healthy ageing?. Nutrition Bulletin 2009, 34(3), 303-308.
• Dronamraju SS, Coxhead JM, Kelly SB, Burn J, Mathers JC. Cell kinetics and gene expression changes in colorectal cancer patients given resistant starch: a randomised controlled trial. Gut 2009, 58(3), 413-420.
• Passos J, Simillion C, Hallinan J, Wipat A, Von Zglinicki T. Cellular senescence: Unravelling complexity. Age 2009, 31(4), 353-363.
• Burgoine T, Lake AA, Alvanides S, Stamp EC, Mathers JC, Adamson AJ. Changing foodscapes 1980-2000, using the ASH30 Study. Appetite 2009, 53(2), 157-165.
• Aitken H, Gorman G, McFarland R, Roberts M, Taylor RW, Turnbull DM. Clinical Reasoning: Blurred vision and dancing feet Restless legs syndrome presenting in mitochondrial disease. Neurology 2009, 72(18), E86-E90.
• Hallinan JS, Pocock MR, Addinall S, Lydall D, Wipat A. Clustering incorporating shortest paths identifies relevant modules in functional interaction networks. In: CIBCB '09: IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. 2009, Nashville, TN, USA: IEEE.
• Lake AA, Hyland RM, Rugg-Gunn A, Mathers JC, Adamson AJ. Combining social and nutritional perspectives: from adolescence to adulthood (the ASH30 Study). British Food Journal 2009, 111(11), 1200-1211.
• Andrews PW, Arias-Diaz J, Auerbach J, Alvarez M, Ahrlund-Richter L, Baker D, Benvenisty N, Ben-Josef D, Blin G, Borghese L, Borstlap J, Bruce K, Brustle O, Buckle R, Camby C, Choo A, Chen W, Collins D, Colman A, Crombie C, Crook J, Cypess R, De Sousa P, Dhawan J, Douay L, Dvorak P, Dyke T, Eriksson L, Firpo M, Fitzgerald C, Glover C, Gokhale P, Greene M, Ha HY, Hampl A, Healy L, Hei D, Holm F, Hovatta O, Hunt C, Hwang SM, Inamdar M, Isasi R, Itskovitz-Eldor J, Jessie N, Kim DW, Kirzner R, Kiatpongsan S, Knowles B, Kuo HC, Laughlin M, Lavon N, Ludwig T, Lakov M, Lee DR, Macauley J, Mckay R, Menasche P, Menendez P, Michalska A, Mileikovskaia M, Minger S, Mishra G, Moody J, Montgomery K, Morris C, Mummery C, Nagy A, Nakamura Y, Nakatsuji N, Nishikawa SI, Oh S, Oh SK, Olson P, Otonkoski T, Patole M, Park HS, Pei XT, Pera M, Puceat M, Rajala K, Reubinoff B, Robins A, Rooke H, Rumayor V, Scotman H, Sherlock J, Simon C, Sipp D, Skinner R, Smith D, Stacey G, Stefanovic S, Strehl R, Taft R, Takahashi T, Talib S, Terstegge S, Turner R, Tuuri T, Yu J, Zandstra P, Zapata A, Zeng FY, Zhou Q, Tannenbaum S, Int Stem Cell Banking Initiative. Consensus Guidance for Banking and Supply of Human Embryonic Stem Cell Lines for Research Purposes. Stem Cell Reviews and Reports 2009, 5(4), 301-314.
• Wakeling LA, Ions LJ, Ford D. Could Sirt1-mediated epigenetic effects contribute to the longevity response to dietary restriction and be mimicked by other dietary interventions?. Age 2009, 31(4), 327-341.
• Mahad DJ, Ziabreva I, Campbell G, Laulund F, Murphy JL, Reeve AK, Greaves L, Smith KJ, Turnbull DM. Detection of cytochrome c oxidase activity and mitochondrial proteins in single cells. Journal of Neuroscience Methods 2009, 184(2), 310-319.
• Commane DM, Arasaradnam RP, Mills S, Mathers JC, Bradburn M. Diet, ageing and genetic factors in the pathogenesis of diverticular disease. World Journal of Gastroenterology 2009, 15(20), 2479-2488.
• Nelson G, Buhmann M, von Zglinicki T. DNA damage foci in mitosis are devoid of 53BP1. Cell Cycle 2009, 8(20), 3379-3383.
• Wang CF, Jurk D, Maddick M, Nelson G, Martin-Ruiz C, von Zglinicki T. DNA damage response and cellular senescence in tissues of aging mice. Aging Cell 2009, 8(3), 311-323.
• Kiec-Wilk B, Razny U, Mathers J, Dembinska-Kiec A. DNA methylation, induced by beta-carotene and arachidonic acid, plays a regulatory role in the pro-angiogenic VEGF-receptor (KDR) gene expression in endothelial cells. Journal of Physiology and Pharmacology 2009, 60(4), 49-53.
• Wright AF, Murphy MP, Turnbull DM. Do organellar genomes function as long-term redox damage sensors?. Trends in Genetics 2009, 25(6), 253-261.
• Coneyworth LJ, Mathers JC, Ford D. Does promoter methylation of the SLC30A5 (ZnT5) zinc transporter gene contribute to the ageing-related decline in zinc status?. Proceedings of the Nutrition Society 2009, 68(2), 142-147.
• Coneyworth L, Mathers J, Ford D. Does promoter methylation of the SLC30A5 (ZnT5) zinc transporter gene contribute to the ageing-related decline in zinc status?. In: Proceedings of the Nutrition Society: Conference on ‘Multidisciplinary approaches to nutritional problems’. 2009, University of Nottingham, UK: Cambridge University Press.
• Bishop DT, Burn J, Mathers JC. Effect of Aspirin or Resistant Starch on Colorectal Neoplasia in the Lynch Syndrome THE AUTHORS REPLY. New England Journal of Medicine 2009, 360(14), 1462-1463.
• Clarke MJ, Mulligan EA, Grogan PT, Mladek AC, Carlson BL, Schroeder MA, Curtin NJ, Lou Z, Decker PA, Wu W, Plummer ER, Sarkaria JN. Effective sensitization of temozolomide by ABT-888 is lost with development of temozolomide resistance in glioblastoma xenograft lines. Molecular Cancer Therapeutics 2009, 8(2), 407-414.
• Relton CL, Groom A, Elliott HR, McConnell JC, McKay JA, Pearce MS, Davey Smith G, Mathers JC. Epigenetic Epidemiology: Evidence for the Role of Epigenetic Variation in Complex Disease. In: 19th International Congress of Nutrition. 2009, Bangkok, Thailand: Annals of Nutrition and Metabolism: S. Karger AG.
• Golebiewska A, Atkinson SP, Lako M, Armstrong L. Epigenetic Landscaping During hESC Differentiation to Neural Cells. Stem Cells 2009, 27(6), 1298-1308.
• Mathers JC, Mckay JA. Epigenetics - Potential Contribution to Fetal Programming. In: Early Nutrition Programming and Health Outcomes in Later Life: Obesity and Beyond. 2009, Dordrecht, Netherlands: Springer.
• Jin Y, Hallinan J. Evolving gene regulatory networks. BioSystems 2009, 98(3), vi-vii.
• Neganova I, Zhang X, Atkinson S, Lako M. Expression and functional analysis of G1 to S regulatory components reveals an important role for CDK2 in cell cycle regulation in human embryonic stem cells. Oncogene 2009, 28(1), 20-30.
• Fan KB, Chrzanowska-Lightowlers ZMA, Hesketh JE. Fine mapping of interactions between eEF1 alpha protein and 3 ' UTR of metallothionein-1 mRNA. Biochemical and Biophysical Research Communications 2009, 386(1), 82-88.
• Mathers JC. Folate intake and bowel cancer risk. Genes and Nutrition 2009, 4(3), 173-178.
• Kipp A, Banning A, van Schothorst EM, Meplan C, Schomburg L, Evelo C, Coort S, Gaj S, Keijer J, Hesketh J, Brigelius Flohe R. Four selenoproteins, protein biosynthesis, and Wnt signalling are particularly sensitive to limited selenium intake in mouse colon. Molecular Nutrition & Food Research 2009, 53(12), 1561-1572.
• Egli R, Southam L, Wilkins JM, Lorenzen I, Pombo-Suarez M, Gonzalez A, Carr A, Chapman K, Loughlin J. Functional analysis of the osteoarthritis susceptibility-associated GDF5 regulatory polymorphism. Arthritis & Rheumatism 2009, 60(7), 2055-2064.
• Lako M, Neganova I, Armstrong L. G(1) to S transition and pluripotency Two sides of the same coin?. Cell Cycle 2009, 8(8), 1108-1109.
• Hanson PS, Hiscock DRR, Morris CM, Thomas AJ. GABA Biomarkers of Depression. GB: GE Healthcare Limited, WO/2009/138500, 2009, 15/05/2008.
• Mellough CB, Steel DHW, Lako M. Genetic basis of inherited macular dystrophies and implications for stem cell therapy. Stem Cells 2009, 27(11), 2833-2845.
• Loughlin J. Genetics and osteoarthritis: implications for the clinic. International Journal Clinical Rheumatology 2009, 4(5), 499-501.
• Hanson PS, Hiscock DRR, Morris CM, Thomas AJ. Glutamine Biomarkers of Depression. GB: GE Healthcare Limited, PCT/EP2009/055945, 15/05/2009.
• Collerton J, Davies K, Jagger C, Kingston A, Bond J, Eccles M, Robinson L, Martin-Ruiz C, Von Zglinicki T, James O, Kirkwood T. Health and disease in 85 year olds: Baseline findings from the Newcastle 85+ cohort study. British Medical Journal 2009, 339, b4904.
• Rubinsztein CD, Cuervo AM, Ravikumar B, Sarkar S, Korolchuk VI, Kaushik S, Klionsky DJ. In search of an “autophagomometer”. Autophagy 2009, 5(5), 585-589.
• Hogan V, White K, Edgar J, McGill A, Karim S, McLaughlin M, Griffiths I, Turnbull D, Nichols P. Increase in mitochondrial density within axons and supporting cells in response to demyelination in the Plp1 mouse model. Journal Neuroscience Research 2009, 87(2), 452-459.
• Daniel RA, Rozanska AL, Thomas HD, Mulligan EA, Drew Y, Castelbuono DJ, Hostomsky Z, Plummer ER, Boddy AV, Tweddle DA, Curtin NJ, Clifford SC. Inhibition of Poly (ADP-Ribose) Polymerase-1 Enhances Temozolomide and Topotecan Activity against Childhood Neuroblastoma. Clinical Cancer Research 2009, 15(4), 1241-1249.
• James K, Wipat A, Hallinan J. Integration of full-coverage probabilistic functional networks with relevance to specific biological processes. In: Data Integration in the Life Sciences: 6th International Workshop (DILS). 2009, Manchester, UK: Springer.
• James K, Wipat A, Hallinan J. Integration of Full-Coverage Probabilistic Functional Networks with Relevance to Specific Biological Processes. In: DATA INTEGRATION IN THE LIFE SCIENCES, PROCEEDINGS. 2009, HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY: SPRINGER-VERLAG BERLIN.
• James K, Wipat A, Hallinan J. Integration of full-coverage probabilistic functional networks with relevance to specific biological processes. In: Data Integration in the Life Sciences: 6th International Workshop. 2009, Manchester, UK: Springer.
• Tyson J, Caple F, Spiers A, Burtle B, Daly AK, Williams EA, Hesketh JE, Mathers JC. Inter-individual variation in nucleotide excision repair in young adults: effects of age, adiposity, micronutrient supplementation and genotype. British Journal of Nutrition 2009, 101(9), 1316-1323.
• Lister AL, Charoensawan V, De S, James K, Chandra JSC, Huppert J. Interfacing systems biology and synthetic biology. Genome Biology 2009, 10(309), 3.
• Meulenbelt I, Chapman K, Dieguez-Gonzalez R, Shi DQ, Tsezou A, Dai J, Malizos KN, Kloppenburg M, Carr A, Nakajima M, van der Breggen R, Lakenberg N, Gomez-Reino JJ, Jiang Q, Ikegawa S, Gonzalez A, Loughlin J, Slagboom EP. Large replication study and meta-analyses of DVWA as an osteoarthritis susceptibility locus in European and Asian populations. Human Molecular Genetics 2009, 18(8), 1518-1523.
• Evangelou E, Chapman K, Meulenbelt I, Karassa FB, Loughlin J, Carr A, Doherty M, Doherty S, Gomez-Reino JJ, Gonzalez A, Halldorsson BV, Hauksson VB, Hofman A, Hart DJ, Ikegawa S, Ingvarsson T, Jiang Q, Jonsdottir I, Jonsson H, Kerkhof HJM, Kloppenburg M, Lane NE, Li J, Lories RJ, van Meurs JBJ, Nakki A, Nevitt MC, Rodriguez-Lopez J, Shi DQ, Slagboom E, Stefansson K, Tsezou A, Wallis GA, Watson CM, Spector TD, Uitterlinden AG, Valdes AM, Ioannidis JPA. Large-Scale Analysis of Association Between GDF5 and FRZB Variants and Osteoarthritis of the Hip, Knee, and Hand. Arthritis & Rheumatism 2009, 60(6), 1710-1721.
• Fellous TG, Islam S, Tadrous PJ, Elia G, Kocher HM, Bhattacharya S, Mears L, Turnbull DM, Taylor RW, Greaves LC, Chinnery PF, Taylor G, McDonald SAC, Wright NA, Alison MR. Locating the Stem Cell Niche and Tracing Hepatocyte Lineages in Human Liver. Hepatology 2009, 49(5), 1655-1663.
• Ravikumar B, Futter M, Jahreiss L, Korolchuk VI, Lichtenberg M, Luo S, Massey DCO, Menzies FM, Narayanan U, Renna M, Jimenez-Sanchez M, Sarkar S, Underwood B, Winslow A, Rubinsztein DC. Mammalian macroautophagy at a glance. Journal of Cell Science 2009, 122(11), 1707-1711.
• Cawston TE. Measurement of activity of collagenolytic MMP and inhibitors of MMPs using radiolabeled collagen substrate. Nature Protocols 2009, 4(3), 286-290.
• Favé G, Beckmann ME, Draper JH, Mathers JC. Measurement of dietary exposure: a challenging problem which may be overcome thanks to metabolomics?. Genes and Nutrition 2009, 4(2), 135-141.
• Waldron KJ, Rutherford JC, Ford D, Robinson NJ. Metalloproteins and metal sensing. Nature 2009, 460(7257), 823-830.
• Sarkar S, Korolchuk V, Renna M, Winslow A, Rubinsztein DC. Methodological considerations for assessing autophagy modulators: A study with calcium phosphate precipitates. Autophagy 2009, 5(3), 307-313.
• van Breda SGJ, van Delft JHM, Engels LGJB, Kleinjans JCS, Mathers JC. Methylation status of CpG islands in the promoter region of genes differentially expressed in colonic mucosa from adenoma patients and controls in response to altered vegetable intake. British Journal of Nutrition 2009, 101(9), 1295-1299.
• Mahad DJ, Ziabreva I, Campbell G, Lax N, White K, Hanson PS, Lassmann H, Turnbull DM. Mitochondrial changes within axons in multiple sclerosis. Brain 2009, 132(5), 1161-1174.
• Greaves LC, Turnbull DM. Mitochondrial DNA mutations and ageing. Biochimica et biophysica acta - General subjects 2009, 1790(10), 1015-1020.
• Jones AR, Lister AL, Hermida L, Wilkinson P, Eisenacher M, Belhajjame K, Gibson F, Lord P, Pocock M, Rosenfelder H, Santoyo-Lopez J, Wipat A, Paton NW. Modeling and Managing Experimental Data Using FuGE. OMICS: A Journal of Integrative Biology 2009, 13(3), 239-251.
• Brinkman R, Bug B, Causton H, Clancy K, Cocos C, Courtot M, Derom D, Deutsch E, Fan L, Field D, Fostel J, Fragaso G, Gibson F, Gray T, Greenbaum J, Grenom P, Grethe J, He Y, Heiskanen M, Hernandez-Boussard T, Lord P, Lister AL, Malone J, Manduchi E, Montecchi L, Morrison N, Mungall C, Parkinson H, Peters B, Pocock M, Rocca-Serra P, Rubin D, Ruttenberg A, Sansone S-A, Scheuermann R, Schober D, Smith B, Soldatova LN, Stenzhorn H, Stoeckert C, Taylor C, Vita R, Westbrook J, White J, Whetzel PL, Wiemann S, Zheng J. Modeling biomedical experimental processes with OBI. In: 12th Annual Bio-Ontologies Meeting, ISMB/ECCB 2009. 2009, Stockholm, Sweden: Intelligent Systems for Molecular Biology.
• Greaves LC, Mathers JC, Taylor RW, Turnbull DM. Modelling mitochondrial DNA mutations in bacterial cytochrome c oxidase: Link to colon cancer?. Proceedings of the National Academy of Sciences of the United States of America 2009, 106(22), E57-E57.
• Gillespie CS. Moment-closure approximations for mass-action models. IET Systems Biology 2009, 3(1), 52-58.
• Adamson AJ, Collerton J, Davies K, Foster E, Jagger C, Stamp E, Mathers JC, Kirkwood T, The Newcastle 85+ Core Study Team. Nutrition in advanced age: dietary assessment in the Newcastle 85+ Study. European Journal of Clinical Nutrition 2009, 63(S1), S6-S18.
• Lake AA, Adamson AJ, Mathers JC, Alvanides S, Burgoine T. Obesogenic Environments: Exploring Longitudinal Change in Food Environments and BMI Across Twenty Years (the ASH30 Study). In: Annals of Nutrition and Metabolism: International Congress of Nutrition. 2009, Bangkok, Thailand: S. Karger AG.
• White KE, Davies VJ, Hogan VE, Piechota MJ, Nichols PP, Turnbull DM, Votruba M. OPA1 Deficiency Associated with Increased Autophagy in Retinal Ganglion Cells in a Murine Model of Dominant Optic Atrophy. Investigative Ophthalmology & Visual Science 2009, 50(6), 2567-2571.
• Ghorbani R, Koocheki A, Brandt K, Wilcockson S, Leifert C. Organic agriculture and food production: Ecological, environmental, food safety and nutritional quality issues. In: Lichtfouse, E, ed. Sociology, Organic farming, Climate Change and Soil Science. London, New York: Springer Dordtrecht Heidelberg, 2009, pp.77-107.
• Elson JL, Swalwell H, Blakely EL, McFarland R, Taylor RW, Turnbull DM. Pathogenic mitochondrial tRNA mutations - which mutations are inherited and why?. Human Mutation 2009, 30(11), E984-E992.
• Hong M, Ryan KR, Arkwright P, Gennery A, Costigan C, Denning D, Cant AJ, Abinun M, Young DA, McConnell V, Spickett GP, Swan DC, Gillespie CS, Lilac D, Dominguez M. Pattern recognition receptor expression is not impaired in patients with chronic mucocutanous candidiasis with or without autoimmune polyendocrinopathy candidiasis ectodermal dystrophy. Clinical and Experimental Immunology 2009, 156(1), 40-51.
• Mitchell J, Smith GCM, Curtin NJ. Poly(ADP-Ribose) Polymerase-1 and DNA-Dependent Protein Kinase Have Equivalent Roles in Double Strand Break Repair Following Ionizing Radiation. International Journal of Radiation: Oncology - Biology - Physics 2009, 75(5), 1520-1527.
• Zaremba T, Ketzer P, Cole M, Coulthard S, Plummer ER, Curtin NJ. Poly(ADP-ribose) polymerase-1 polymorphisms, expression and activity in selected human tumour cell lines. British Journal of Cancer 2009, 101(2), 256-262.
• Thomas HD, Saravanan K, Wang LZ, Lin MJ, Northen JS, Barlow H, Barton M, Newell DR, Griffin RJ, Golding BT, Curtin NJ. Preclinical evaluation of a novel pyrimidopyrimidine for the prevention of nucleoside and nucleobase reversal of antifolate cytotoxicity. Molecular Cancer Therapeutics 2009, 8(7), 1828-1837.
• Penn L, White M, Oldroyd J, Walker M, Alberti KGMM, Mathers JC. Prevention of type 2 diabetes in adults with impaired glucose tolerance: the European Diabetes Prevention RCT in Newcastle upon Tyne, UK. BMC Public Health 2009, 9, 342.
• Greaves LC, Beadle NE, Taylor GA, Commane D, Mathers JC, Khrapko K, Turnbull DM. Quantification of mitochondrial DNA mutation load. Aging Cell 2009, 8(5), 566-572.
• Craigie AM, Matthews JNS, Rugg-Gunn AJ, Lake AA, Mathers JC, Adamson AJ. Raised adolescent body mass index predicts the development of adiposity and a central distribution of body fat in adulthood: a longitudinal study. Obesity Facts 2009, 2(3), 150-156.
• Meplan C, Nicol F, Burtle BT, Crosley LK, Arthur JR, Mathers JC, Hesketh JE. Relative Abundance of Selenoprotein P Isoforms in Human Plasma Depends on Genotype, Se Intake, and Cancer Status. Antioxidants & Redox Signaling 2009, 11(11), 2631-2640.
• Lister AL, Pocock M, Taschuk M, Wipat A. Saint: A Lightweight Integration Environment for Model Annotation. Bioinformatics 2009, 25(22), 3026-3027.
• Lister AL, Pocock M, Wipat A. Saint: a lightweight SBML annotation integration environment. In: BioSysBio. 2009, Cambridge.
• Wilkinson DJ. Stochastic modelling for quantitative description of heterogeneous biological systems. Nature Reviews: Genetics 2009, 10(2), 122-133.
• Hapangama DK, Turner MA, Drury JA, Quenby S, Hart A, Maddick M, Martin-Ruiz C, von Zglinicki T. Sustained replication in endometrium of women with endometriosis occurs without evoking a DNA damage response. Human Reproduction 2009, 24(3), 687-696.
• Lydall D. Taming the tiger by the tail: modulation of DNA damage responses by telomeres. EMBO Journal 2009, 28(15), 2174-2187.
• Saretzki G. Telomerase, mitochondria and oxidative stress. Experimental Gerontology 2009, 44(8), 485-492.
• LeBel C, Rosonina E, Sealey DCF, Pryde F, Lydall D, Maringele L, Harrington LA. Telomere Maintenance and Survival in Saccharomyces cerevisiae in the Absence of Telomerase and RAD52. Genetics 2009, 182(3), 671-684.
• Dieguez-Gonzalez R, Calaza M, Shi D, Meulenbelt I, Loughlin J, Tsezou A, Dai J, Malizos KN, Slagboom EP, Kloppenburg M, Chapman K, Jiang Q, Kremer D, Gomez-Reino JJ, Nakajima N, Ikegawa S, Gonzalez A. Testing the druggable EDG2 knee OA genetic factor for replication in a wide range of sample collections. Annals of the Rheumatic Diseases 2009, 68(6), 1017-1021.
• Bishop D, Burn J, Mathers J. The authors reply. New England Journal of Medicine 2009, 360(14), 1462-1463.
• Lake AA, Adamson AJ, Craigie AM, Rugg-Gunn AJ, Mathers JC. Tracking of Dietary Intake and Factors Associated with Dietary Change from Early Adolescence to Adulthood: The ASH30 Study. Obesity Facts 2009, 2(3), 157-165.
• Rocha G, Roughan JV, Leach MC, Flecknell PA, Ingram CD, Brandt K. Traditional use, chemical analysis and antinociceptive effects of Hyptis crenato Pohl. In: Planta Medica: 57th International Congress and Annual Meeting of the Society for Medicinal Plant and Natural Product Research. 2009, Geneva, Switzerland: Georg Thieme Verlag.
• Leung WC, Hessel S, Méplan C, Flint J, Oberhauser V, Tourniaire F, Hesketh JE, von Lintig J, Lietz G. Two common single nucleotide polymorphisms in the gene encoding β-carotene 15,15′-monoxygenase alter β-carotene metabolism in female volunteers. FASEB Journal 2009, 23(4), 1041-1053.
• Whittaker RG, Blackwood JK, Alston CL, Blakely EL, Elson JL, McFarland R, Chinnery PF, Turnbull DM, Taylor RW. Urine Heteroplasmy is the Best Predictor of Clinical Outcome in the m.3243A > G mtDNA Mutation. Neurology 2009, 72(6), 568-569.
• Ali M, Telfer BA, McCrudden C, O'Rourke M, Thomas HD, Kamjoo M, Kyle S, Robson T, Shaw C, Hirst DG, Curtin NJ, Williams KJ. Vasoactivity of AG014699, a Clinically Active Small Molecule Inhibitor of Poly(ADP-ribose) Polymerase: a Contributory Factor to Chemopotentiation In vivo?. Clinical Cancer Research 2009, 15(19), 6106-6112.
• Basterfield L, Lumley LK, Mathers JC. Wheel running in female C57BL/6J mice: impact of oestrus and dietary fat and effects on sleep and body mass. International Journal of Obesity 2009, 33(2), 212-218.
• Davison G, Mathers JC, Ford D, Valentine RA. [Meeting Abstract] Effects of Dietary Zinc Supply During Pregnancy on Global DNA Methylation. Annals of Nutrition and Metabolism 2009, 55(s1), 461.
• Mathers JC. [Meeting Abstract] Nutrition and Epigenomics: How the Genome Learns from Experience. Annals of Nutrition and Metabolism 2009, 55(s1), 13.