Publications

Biology, Neurosciences and Computing Publications

Städele C, Andras P, Stein W. Simultaneous measurement of membrane potential changes in multiple pattern generating neurons using voltage sensitive dye imaging. Journal of Neuroscience Methods 2012, 203(1), 78-88.
Lythgow KT, Hudson G, Andras P, Chinnery PF. A critical analysis of the combined usage of protein localization prediction methods: Increasing the number of independent data sets can reduce the accuracy of predicted mitochondrial localization. Mitochondrion 2011, 11(3), 444-449.
Kaiser M. A tutorial in connectome analysis: Topological and spatial features of brain networks. NeuroImage 2011, 57(3), 892-907.
Weatherhead S, Farr P, Swan D, Jamieson D, Hallinan J, Lloyd J, Wipat A, Reynolds N. Apoptosis of keratinocytes is a key mechanism in UVB-induced clearance of psoriasis. In: 41st Annual Meeting of the European Society for Dermatological Research. 2011, Barcelona, Spain: Nature Publishing Group.
Kolluru B, Nakjang S, Hirt RP, Wipat A, Ananiadou S. Automatic extraction of microorganisms and their habitats from free text using text mining workflows. Journal of Integrative Bioinformatics 2011, 8(2), 184.
Echtermeyer C, Costa LD, Rodrigues FA, Kaiser M. Automatic Network Fingerprinting through Single-Node Motifs. PLoS ONE 2011, 6(1), e15765.
Misirli G, Hallinan JS, Pocock M, Cockell SJ, Weile J, Wipat A. BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2011. School of Computing Science Technical Report Series 1237.
Weile J, Pocock M, Cockell SJ, Lord P, Dewar JM, Wilkinson D, Lydall D, Hallinan J, Wipat A. Customisable views on a semantically integrated network for systems biology. Bioinformatics 2011, 27(9), 1299-1306.
Pakhira A, Andras P. Dynamic network analysis of software systems. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2011. School of Computing Science Technical Report Series 1239.
Varier S, Kaiser M, Forsyth R. Establishing, versus Maintaining, Brain Function: A Neuro-computational Model of Cortical Reorganization after Injury to the Immature Brain. Journal of the International Neuropsychological Society 2011, 17(6), 1030-1038.
Kaiser M, Varier S. Evolution and development of Brain Networks: From Caenorhabditis elegans to Homo sapiens. Network : computation in neural systems 2011, 22(1-4), 143-147.
Chang H, Lawless C, Addinall SG, Oexle S, Taschuk M, Wipat A, Wilkinson DJ, Lydall D. Genome-Wide Analysis to Identify Pathways Affecting Telomere-Initiated Senescence in Budding Yeast. G3: Genes, Genomes, Genetics 2011, 1(3), 197-208.
Weatherhead SC, Farr PM, Jamieson D, Hallinan JS, Lloyd JL, Wipat A, Reynolds NJ. Keratinocyte Apoptosis in Epidermal Remodeling and Clearance of Psoriasis Induced by UV Radiation. Journal of Investigative Dermatology 2011, 131(9), 1916-1926.
Quinn TA, Granite S, Allessie MA, Antzelevitch C, Bollensdorff C, Bub G, Burton RAB, Cerbai E, Chen PS, Delmar M, DiFrancesco D, Earm YE, Efimov IR, Egger M, Entcheva E, Fink M, Fischmeister R, Franz MR, Garny A, Giles WR, Hannes T, Harding SE, Hunter PJ, Iribe G, Jalife J, Johnson CR, Kass RS, Kodama I, Koren G, Lord P, Markhasin VS, Matsuoka S, McCulloch AD, Mirams GR, Morley GE, Nattel S, Noble D, Olesen SP, Panfilov AV, Trayanova NA, Ravens U, Richard S, Rosenbaum DS, Rudy Y, Sachs F, Sachse FB, Saint DA, Schotten U, Solovyova O, Taggart P, Tung L, Varro A, Volders PG, Wang K, Weiss JN, Wettwer E, White E, Wilders R, Winslow RL, Kohl P. Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing. Progress in Biophysics & Molecular Biology 2011, 107(1), 4-10.
Misirli G, Hallinan JS, Yu T, Lawson JR, Wimalaratne SM, Cooling MT, Wipat A. Model annotation for synthetic biology: automating model to nucleotide sequence conversion. Bioinformatics 2011, 27(7), 973-979.
Andras P. Modelling living systems. In: Proceedings of the 10th European Conference on Artificial Life - ECAL 2009, LNCS 5778. 2011, Budapest, Hungary.
James K, Lycett SJ, Wipat A, Hallinan JS. Multiple Gold Standards Address Bias in Functional Network Integration. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2011. School of Computing Science Technical Report Series 1302.
Andras P. Networks of artificial social interactions. In: Proceedings of the 10th European Conference on Artificial Life - ECAL 2009, LNCS 5778. 2011, Budapest, Hungary.
Varier S, Kaiser M. Neural Development Features: Spatio-Temporal Development of the Caenorhabditis elegans Neuronal Network. PLOS Computational Biology 2011, 70(1), e1001044.
Stein W, Städele C, Andras P. Optical imaging of neurons in the crab stomatogastric ganglion with voltage-sensitive dyes. Journal of Visualized Experiments 2011, 49, 5.
Addinall SG, Holstein EM, Lawless C, Yu M, Chapman K, Banks AP, Ngo HP, Maringele L, Taschuk M, Young A, Ciesiolka A, Lister AL, Wipat A, Wilkinson DJ, Lydall D. Quantitative Fitness Analysis Shows That NMD Proteins and Many Other Protein Complexes Suppress or Enhance Distinct Telomere Cap Defects. PLoS Genetics 2011, 7(4), e1001362.
Andras P. Research: metrics, quality, and management implications. Research Evaluation 2011, 20(2), 90-106.
Stein W, Städele C, Andras P. Single-sweep voltage sensitive dye imaging of interacting identified neurons. Journal of Neuroscience Methods 2011, 194(2), 224-234.
Stadler LKJ, Hoffmann T, Tomlinson DC, Song Q, Lee T, Busby M, Nyathi Y, Gendra E, Tiede C, Flanagan K, Cockell SJ, Wipat A, Harwood C, Wagner SD, Knowles MA, Davis JJ, Keegan N, KoFerrigno P. Structure-function studies of an engineered scaffold protein derived from Stefin A. II: Development and applications of the SQT variant. Protein Engineering Design and Selection 2011, 24(9), 751-763.
Luo JW, Mak T, Yu B, Andras P, Yakovlev A. Towards neuro-silicon interface using reconfigurable dynamic clamping. In: Conference of the IEEE Engineering in Medicine and Biology Society. 2011, Boston, Massachusetts, USA: IEEE.
Pakhira A, Andras P. Validation of Network Analysis Methods Applied in the Context of Dynamic Analysis of Software Systems. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2011. School of Computing Science Technical Report Series 1240.
Roopun AK, Simonotto JD, Pierce ML, Jenkins A, Schofield IS, Whittaker RG, Kaiser M, Whittington MA, Traub RD, Cunningham MO. A nonsynaptic mechanism underlying interictal discharges in human epileptic neocortex. Proceedings of the National Academy of Sciences of the United States of America 2010, 107(1), 338-343.
Lord P. An evolutionary approach to Function. Journal of Biomedical Semantics 2010, 1(s1), s4.
Pakhira A, Andras P. Can we use network analysis methods to discover functionally important method calls in software systems by considering dynamic analysis data?. In: Workshop on Program Comprehension through Dynamic Analyss (PCODA). 2010, Boston, Massachusetts, USA.
Hallinan J, Misirli G, Wipat A. Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits. In: 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). 2010, Buenos Aires, Argentina: IEEE.
Stein W, Andras P. Light-induced effects of a fluorescent voltage-sensitive dye on neuronal activity in the crab stomatogastric ganglion. Journal of Neuroscience Methods 2010, 188(2), 290-294.
Lord P, Stevens R. Ontogenesis - An Ontology Tutorial. Newcastle University, Newcastle upon Tyne, UK: Knowledgeblog Project, 2010. Available at: http://dx.doi.org/10.4124/A34124.
Kaiser M, Hilgetag C. Optimal hierarchical modular topologies for producing limited sustained activation of neural networks. Frontiers in Neuroinformatics 2010, 4, 8.
Kaiser M, Hilgetag C, Van Ooyen A. A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions. Cerebral Cortex 2009, 19(12), 3001-3010.
Lister AL, Lord P, Pocock M, Wipat A. Annotation of SBML Models Through Rule-Based Semantic Integration. In: 12th Annual Bio-Ontologies Meeting colocated with ISMB. 2009, Stockholm, Sweden: Intelligent Systems for Molecular Biology.
Costa LD, Rodrigues FA, Hilgetag CC, Kaiser M. Beyond the average: Detecting global singular nodes from local features in complex networks. Europhysics Letters 2009, 87(1), -.
James K, Wipat A, Hallinan J. Integration of full-coverage probabilistic functional networks with relevance to specific biological processes. In: Data Integration in the Life Sciences: 6th International Workshop (DILS). 2009, Manchester, UK: Springer.
Jones AR, Lister AL, Hermida L, Wilkinson P, Eisenacher M, Belhajjame K, Gibson F, Lord P, Pocock M, Rosenfelder H, Santoyo-Lopez J, Wipat A, Paton NW. Modeling and Managing Experimental Data Using FuGE. OMICS: A Journal of Integrative Biology 2009, 13(3), 239-251.
Brinkman R, Bug B, Causton H, Clancy K, Cocos C, Courtot M, Derom D, Deutsch E, Fan L, Field D, Fostel J, Fragaso G, Gibson F, Gray T, Greenbaum J, Grenom P, Grethe J, He Y, Heiskanen M, Hernandez-Boussard T, Lord P, Lister AL, Malone J, Manduchi E, Montecchi L, Morrison N, Mungall C, Parkinson H, Peters B, Pocock M, Rocca-Serra P, Rubin D, Ruttenberg A, Sansone S-A, Scheuermann R, Schober D, Smith B, Soldatova LN, Stenzhorn H, Stoeckert C, Taylor C, Vita R, Westbrook J, White J, Whetzel PL, Wiemann S, Zheng J. Modeling biomedical experimental processes with OBI. In: 12th Annual Bio-Ontologies Meeting, ISMB/ECCB 2009. 2009, Stockholm, Sweden: Intelligent Systems for Molecular Biology.
Ribeiro P, Simonotto J, Kaiser M, Silva F. Parallel calculation of multi-electrode array correlation networks. Journal of Neuroscience Methods 2009, 184(2), 357-364.
Lister AL, Pocock M, Taschuk M, Wipat A. Saint: A Lightweight Integration Environment for Model Annotation. Bioinformatics 2009, 25(22), 3026-3027.
Ribeiro P, Silva F, Kaiser M. Strategies for network motifs discovery. In: 5th IEEE International Conference on e-Science. 2009, Oxford, UK: IEEE.
Flanagan K. [PhD Thesis] A Grid and Cloud-based framework for high throughput bioinformatics. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2009.
Watson P, Lord P, Gibson F, Periorellis P, Pitsilis G. Cloud Computing for e-Science with CARMEN. In: Proceedings of the 2nd Iberian Grid Infrastructure (IBERGRID). 2008, Porto, Portugal: Netbiblo.
Gibson F, Anderson L, Babnigg G, Baker M, Berth M, Binz P-A, Borthwick A, Cash P, Day BW, Friedman DB, Garland D, Gutstein HB, Hoogland C, Jones NA, Khan A, Klose J, Lamond AI, Lemkin PF, Lilley KS, Minden J, Morris NJ, Paton NW, Pisano MR, Prime JE, Rabilloud T, Stead DA, Taylor CF, Voshol H, Wipat A, Jones AR. Guidelines for reporting the use of gel electrophoresis in proteomics. Nature Biotechnology 2008, 26(8), 863-864.
Kaiser M. Mean clustering coefficients: The role of isolated nodes and leafs on clustering measures for small-world networks. New Journal of Physics 2008, 10.
Kaiser M. Multiple-scale hierarchical connectivity of cortical networks limits the spread of activity. In: Soltesz, I. and Staley, K, ed. Computational Neuroscience in Epilepsy. Amsterdam; London: Academic Press, 2008, pp.132-140.
Roopun AK, Kramer MA, Carracedo LM, Kaiser M, Davies CH, Traub RD, Kopell NJ, Whittington MA. Period concatenation underlies interactions between gamma and beta rhythms in neocortex. Frontiers in Cellular Neuroscience 2008, 2, 1.
Roopun AK, Kramer MA, Carracedo LM, Kaiser M, Davies CH, Traub RD, Kopell NJ, Whittington MA. Temporal interactions between cortical rhythms. Frontiers in Neuroscience 2008, 2(2), 145-154.
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen M, Angiuoli S, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, Depamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner F, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis S, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone S, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A. The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology 2008, 26(5), 541-547.
Andras P. Uncertainty and communication complexity in iterated cooperation games. In: Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems. 2008, Winchester, UK: MIT Press.
Merelli E, Armano G, Cannata N, Corradini F, d'Inverno M, Doms A, Lord P, Martin A, Milanesi L, Moller S, Schroeder M, Luck M. Agents in bioinformatics, computational and systems biology. Briefings in Bioinformatics 2007, 8(1), 45-59.
Andras P, Lycett S. An advantage of chaotic neural dynamics. In: Proceedings of the International Joint Conference on Neural Networks (IJCNN). 2007, Orlando, Florida, USA: IEEE.
Andras P, Herald NDJ, Charlton BG. An analysis of the dynamics of British academic science. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2007. School of Computing Science Technical Report Series 1006.
Kaiser M. Brain architecture: a design for natural computation. Philosophical Transactions of the Royal Society London Series A 2007, 365, 3033-3045.
Charlton BG, Andras P. Complex biological memory conceptualized as an abstract communication system – human long term memories grow in complexity during sleep and undergo selection while awake. In: Perlovsky, L., Kozma, R, ed. Neurodynamics of Cognition and Consciousness. Berlin; New York: Springer, 2007, pp.325-340.
Andras P, Wennekers T. Cortical activity pattern computation. BioSystems 2007, 87(2-3), 179-185.
Kaiser M, Hilgetag CC. Development of multi-cluster cortical networks by time windows for spatial growth. Neurocomputing 2007, 70(10-12), 1829-1832.
Nisbach F, Kaiser M. Developmental time windows for spatial growth generate multiple-cluster small-world networks. European Physical Journal B: Condensed Matter and Complex Systems 2007, 58(2), 185-191.
Andras P, Gwyther R, Madalinski AA, Lynden SJ, Andras A, Young MP. Ecological network analysis: An application to the evaluation of effects of pesticide use in an agricultural environment. Pest Management Science 2007, 63(10), 943-953.
Parkin SE, Andras P, Morgan G. Evolutionary optimization of parameters for distributed virtual environments. In: IEEE Congress on Evolutionary Computation (CEC). 2007, Singapore: IEEE.
Sun Y, Wipat A, Pocock M, Lee PA, Flanagan K, Worthington JT. Exploring microbial genome sequences to identify protein families on the grid. IEEE Transactions on Information Technology in Biomedicine 2007, 11(4), 435-442.
Wennekers T, Ay N, Andras P. High-resolution multiple-unit EEG in cat auditory cortex reveals large spatio-temporal stochastic interactions. BioSystems 2007, 89(1-3), 190-197.
Lister AL, Jones AR, Pocock M, Shaw O, Wipat A. Implementing the FuGE Object Model: a Systems Biology Data Portal and Integrator. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2007. School of Computing Science Technical Report Series 1016.
Lister AL, Pocock M, Wipat A. Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models. Journal of Integrative Bioinformatics 2007, 4(3), 80.
Lister A L, Pocock M, Wipat A. Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2007. School of Computing Science Technical Report Series 1043.
Goble C, Wolstencroft K, Goderis A, Hull D, Zhao J, Alper P, Lord P, Wroe C, Belhajjame K, Turi D, Stevens R, Oinn T, De Roure D. Knowledge discovery for biology with Taverna: Producing and consuming semantics in the Web of Science. In: Baker, C.J.O., Cheung, K.-H, ed. Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences. New York, USA: Springer, 2007, pp.355-395.
Hallinan JS, Wipat A. Motifs and modules in fractured functional yeast networks. In: IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 07). 2007, Honolulu, Hawaii: IEEE.
Costa L da F, Kaiser M, Hilgetag CC. Predicting the connectivity of primate cortical networks from topological and spatial node properties. BMC Systems Biology 2007, 1(16).
Steggles LJ, Banks R, Shaw O, Wipat A. Qualitatively modelling and analysing genetic regulatory networks: A Petri net approach. Bioinformatics 2007, 23(3), 336-343.
Andras P, Herald NDJ, Charlton BG. Science production in top 20 UK universities is catching-up with the US universities. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2007. School of Computing Science Technical Report Series 1053.
Kaiser M, Martin R, Andras P, Young MP. Simulation of robustness against lesions of cortical networks. European Journal of Neuroscience 2007, 25(10), 3185-3192.
Watson P, Jackson T, Pitsilis G, Gibson F, Austin J, Fletcher M, Liang B, Lord P. The CARMEN Neuroscience Server. In: Proceedings of the UK e-Science All Hands Meeting. 2007, Nottingham, UK: National e-Science Centre.
Watson P, Jackson T, Pitsilis G, Gibson F, Austin J, Fletcher M, Liang B, Lord P. The CARMEN Neuroscience Server. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2007. School of Computing Science Technical Report Series 1042.
Aranguren ME, Bechhofer S, Lord P, Sattler U, Stevens R. Understanding and using the meaning of statements in a bio-ontology: Recasting the Gene Ontology in OWL. BMC Bioinformatics 2007, 8(57).
Stevens R, Lord P, Hull D. Using distributed data and tools in bioinformatics applications. In: Lengauer, T, ed. The Holy Grail: Molecular Function. Weinheim: Wiley, VCH, 2007, pp.1627-1650.
Andras P, Ha HN. A Scientific Document Management System for Neuroscience. In: Fifteenth Annual Computational Neuroscience Meeting (CNS*2006). 2006, Edinburgh: National Institute of Mental Health.
Shaw O, Steggles J, Wipat A. Automatic Parameterisation of Stochastic Petri Net Models of Biological Networks. In: Second International Workshop on the Practical Application of Stochastic Modeling (PASM 2005). 2006, Newcastle upon Tyne: Electronic Notes in Theoretical Computer Science: Elsevier BV.
Hallinan J, Wipat A. Clustering and cross-talk in a yeast functional interaction network. In: IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). 2006, Toronto, Ontario, Canada: IEEE.
Craddock T, Lord P, Harwood C, Wipat A. e-science tools for the genomic scale characterisation of bacterial secreted proteins. In: Proceedings of the UK e-Science All Hands Meeting 2006. 2006, Nottingham, UK: National e-Science Centre.
Andras P. Extraction of an activity pattern language from EEG data. Neurocomputing 2006, 69(10-12), 1313-1316.
Andras P, Idowu O, Periorellis P. Fault tolerance and network integrity measures: the case of computer-based systems. In: Adaptation in Artificial and Biological Systems (AISB '06). 2006, University of Bristol, UK: Society for the Study of Artificial Intelligence and the Simulation of Behaviour.
Gibson F, Wipat A, Pocock M, Morris N. GELI: a data model for the representation of a gel electrophoresis experiment. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2006. School of Computing Science Technical Report Series 942.
Charlton BG, Andras P. Globalization in science education: An inevitable and beneficial trend. Medical Hypotheses 2006, 66(5), 869-873.
Bechhofer SK, Stevens RD, Lord PW. GOHSE: Ontology Driven Linking of Biology Resources. Journal of Web Semantics 2006, 4(3), 155-163.
Parkin S E, Andras P, Morgan G. Managing Missed Interactions in Distributed Virtual Environments. In: Virtual Environments 2006: 12th Eurographics Symposium on Virtual Environments. 2006, Lisbon, Portugal: Eurographics Association.
Steggles LJ, Banks R, Wipat A. Modelling and analysing genetic networks: From Boolean networks to Petri nets. In: Computational Methods in Systems Biology: International Conference (CMSB 2006). 2006, Trento, Italy: Springer-Verlag.
Steggles LJ, Banks R, Wipat A. Modelling and Analysing Genetic Networks: From Boolean Networks to Petri Nets. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2006. School of Computing Science Technical Report Series 962.
Charlton B, Andras P. Oxbridge versus the 'Ivy League' : 30 year citation trends. Oxford Magazine 2006, (255), 16-16.
Wolstencroft K, Lord P, Tabernero L, Brass A, Stevens R. Protein classification using ontology classification. In: 14th Conference on Intelligent Systems for Molecular Biology (ISMB 2006). 2006, Fortaleza, Brazil: Bioinformatics: Oxford University Press.
Charlton B, Andras P. Reply to May and Harvey. Oxford Magazine 2006, (255), 18-18.
Oinn T, Greenwood M, Addis M, Alpdemir MN, Ferris J, Glover K, Goble C, Goderis A, Hull D, Marvin D, Li P, Lord P, Pocock MR, Senger M, Stevens R, Wipat A, Wroe C. Taverna: lessons in creating a workflow environment for the life sciences. Concurrency and Computation: Practice and Experience 2006, 18(10), 1067-1100.
Andras P. The language of cortical dynamics. In: Computational Life Sciences II: Second International Symposium (CompLife 2006). 2006, Cambridge, UK: Springer-Verlag.
Andras P, Lazarus J, Roberts G, Lynden SJ. Uncertainty and Cooperation: Analytical Results and a Simulated Agent Society. Journal of Artificial Societies and Social Simulation 2006, 9(1).
Sun Y, Wipat A, Pocock M, Lee PA, Watson P, Flanagan K, Worthington JT. A grid-based system for microbial genome comparison and analysis. In: IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2005. 2005, Cardiff, Wales: IEEE.
Wolstencroft K, Brass A, Horrocks I, Lord P, Sattler U, Turi D, Stevens R. A Little Semantic Web Goes a Long Way in Biology. In: The Semantic Web: 4th International Semantic Web Conference (ISWC 2005). 2005, Galway, Ireland: Springer-Verlag.
Shaw OJ, Steggles LJ, Wipat A. Automatic Parameterisation of Stochastic Petri Net Models of Biological Networks. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2005. School of Computing Science Technical Report Series 909.
Andras P, Lazarus J. Cooperation, Risk and the Evolution of Teamwork. In: Gold, N, ed. Teamwork: Multi-Disciplinary Perspectives. Basingstoke: Palgrave Macmillan, 2005, pp.56-77.
Lord P, Stevens RD, Goble CA, Horrocks I. Description Logics: OWL and DAML+OIL. In: Dunn, M.J. et al, ed. Encyclopedia of Genetics, Genomics, Proteomics, and Bioinformatics. Chichester: John Wiley, 2005.
Sun Y, Wipat A, Pocock M, Lee P, Flanagan K, Worthington J. Exploring Microbial Genome Sequences to Identify Protein Families on the Grid. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2005. School of Computing Science Technical Report Series 931.
Andras P, Charlton BG. Faults, errors and failures in communications: A systems theory perspective on organisational structure. In: Besnard, D., Gacek, C., Jones, C.B, ed. Structure for Dependability: Computer-Based Systems from an Interdisciplinary Perspective. London: Springer-Verlag, 2005, pp.189-213.
Lord P, Alper P, Wroe C, Goble C. Feta: A light-weight architecture for user oriented semantic service discovery. In: The Semantic Web: Research and Applications: Second European Semantic Web Conference (ESWC 2005). 2005, Heraklion, Crete, Greece: Springer-Verlag.
Charlton BG, Andras P. Medical research funding may have over-expanded and be due for collapse. QJM: An International Journal of Medicine 2005, 98(1), 53-55.
Charlton BG, Andras P. Modernizing UK health services: 'Short-sharp-shock' reform, the NHS subsistence economy, and the spectre of health care famine. Journal of Evaluation in Clinical Practice 2005, 11(2), 111-119.
Andras P. Neural activity pattern systems. Neurocomputing 2005, 65-66, 531-536.
Bechhofer SK, Stevens RD, Lord PW. Ontology Driven Dynamic Linking of Biology Resources. In: Pacific Symposium on Biocomputing 2005. 2005, Hawaii, USA: World Scientific.
Wolstencroft K, Oinn T, Goble C, Ferris J, Wroe C, Lord P, Glover K, Stevens R. Panoply of Utilities in Taverna. In: First International Conference on e-Science and Grid Computing. 2005, Melbourne, Australia: IEEE Computer Society.
Andras P. Pattern computation in neural communication systems. Biological Cybernetics 2005, 92(6), 452-460.
Garwood K, Lord P, Parkinson H, Paton NW, Goble C. Pedro ontology services: A framework for rapid ontology markup. In: The Semantic Web: Research and Applications: Second European Semantic Web Conference (ESWC 2005). 2005, Heraklion, Crete, Greece: Springer-Verlag.
Andras P, Charlton BG. Self-aware software - Will it become a reality?. In: Self-star properties in complex information systems: conceptual and practical foundations. Berlin: Springer, 2005, pp.229-259.
Goderis A, Sattler U, Lord P, Goble C. Seven bottlenecks to workflow reuse and repurposing. In: The Semantic Web: 4th International Semantic Web Conference (ISWC 2005). 2005, Galway, Ireland: Springer-Verlag.
Zhao J, Lord P, Alper P, Wroe C, Goble C. The implications of Semantic Web technologies for support of the e-science process. In: UK e-Science All Hands Meeting 2005. 2005, Nottingham, UK: EPSRC.
Charlton BG, Andras PE. The need for a new specialist professional research system of "pure" medical science. PLoS Medicine 2005, 2(8), e285-e285.
Andras P, Andras C. The origins of life - The 'protein interaction world' hypothesis: Protein interactions were the first form of self-reproducing life and nucleic acids evolved later as memory molecules. Medical Hypotheses 2005, 64(4), 678-688.
Charlton BG, Andras P. Universities and social progress in modernising societies: how educational expansion has replaced socialism as an instrument of political reform. Critical Quarterly 2005, 47(1-2), 30-39.
Sun Y, Wipat A, Pocock M, Lee P, Watson P, Flanagan K, Worthington J. A Grid-based System for Microbial Genome Comparison and Analysis. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2004. School of Computing Science Technical Report Series 881.
Andras P. A Model for Emergent Chaotic Order in Small Neural Networks. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2004. School of Computing Science Technical Report Series 860.
Sandor Z, Andras P. Alternative sampling methods for estimating multivariate normal probabilities. Journal of Econometrics 2004, 120(2), 207-234.
Stevens R, Lord P. Application of Ontologies in Bioinformatics. In: Staab, S and Studer, R, ed. Handbook on Ontologies. Berlin: Springer-Verlag, 2004, pp.735-756.
Shaw O, Koelmans A, Steggles J, Wipat A. Applying Petri Nets to Systems Biology using XML Technologies. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2004. School of Computing Science Technical Report Series 827.
Shaw O, Koelmans A, Steggles J, Wipat A. Applying Petri Nets to Systems Biology using XMLTechnologies. In: Workshop on the Definition, Implementation and Application of a Standard Interchange Format for Petri Nets. Satellite event of ATPN : 25th International Conference on Application and Theory of Petri Nets. 2004, Bologna, Italy.
Lord P, Bechhofer S, Wilkinson MD, Schiltz G, Gessler D, Hull D, Goble C, Stein L. Applying semantic web services to bioinformatics: Experiences gained, lessons learnt. In: The Semantic Web: Third International Semantic Web Conference (ISWC 2004). 2004, Hiroshima, Japan: Springer-Verlag.
Li P, Hayward K, Jennings C, Owen K, Oinn T, Stevens R, Pearce S, Wipat A. Association of variations in I kappa B-epsilon with Graves’ disease using classical and myGrid methodologies. In: 2004 UK e-Science All Hands Meeting. 2004, Nottingham, UK: Engineering and Physical Sciences Research Council.
Wroe C, Goble C, Greenwood M, Lord P, Miles S, Papay J, Payne T, Moreau L. Automating experiments using semantic data on a bioinformatics grid. IEEE Intelligent Systems 2004, 19(1), 48-55.
Idowu OC, Lynden SJ, Young MP, Andras P. Bacillus Subtilis Protein Interaction Network Analysis. In: IEEE Computational Systems Bioinformatics Conference (CSB). 2004, Stanford, California: IEEE.
Charlton BG, Andras P. Campaign to revitalise academic medicine: is the bubble due to burst for medical research funding?. British Medical Journal 2004, 329(7460), 294-294.
Periorellis P, Idowu OC, Lynden SJ, Young MP, Andras P. Dealing with Complex Networks of Process Interactions: A Security Measure. In: 9th IEEE International Conference on Engineering Complex Computer Systems (ICECCS). 2004, Florence, Italy: IEEE.
Oinn T, Addis M J, Ferris J, Marvin DJ, Greenwood M, Goble C, Wipat A, Li P, Carver T. Delivering Web service coordination capability to users. In: 13th World Wide Web Conference (WWW2004). 2004, New York, USA: ACM.
Wipat A, Sun Y, Pocock M, Lee P, Watson P, Flanagan K. Developing Grid-based Systems for Microbial Genome. In: UK e-Science All Hands Meeting 2004. 2004, Nottingham UK: EPSRC.
Andras P, Charlton BG. European science must embrace modernization. Nature 2004, 429(6993), 699-699.
Stevens RD, Tipney HJ, Wroe CJ, Oinn TM, Senger M, Lord PW, Goble CA, Brass A, Tassabehji M. Exploring Williams-Beuren Syndrome Using myGrid. In: 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology. 2004, Glasgow, UK: Bioinformatics: Oxford University Press.
Stevens RD, Tipney HJ, Wroe CJ, Oinn TM, Senger M, Lord PW, Goble CA, Brass A, Tassabehji M. Genome science performed with e-science tools. In: UK e-Science All Hands Meeting 2004. 2004, Nottingham, UK: EPSRC.
Stevens R, McEntire R, Goble C, Greenwood M, Zhao J, Wipat A, Li P. myGrid and the drug discovery process. Drug Discovery Today: BIOSILICO 2004, 4(2), 140-148.
Andras P. Pattern languages: A new paradigm for neurocomputation. Neurocomputing 2004, 58-60, 223-228.
Wroe C, Lord P, Miles S et al. Recycling services and workflows through discovery and reuse. In: UK e-Science All Hands Meeting 2004. 2004, Nottingham, UK: EPSRC.
Shaw OJ, Harwood C, Steggles LJ, Wipat A. SARGE: A tool for creation of putative genetic networks. Bioinformatics 2004, 20(18), 3638-3640.
Oinn T, Addis M, Ferris J, Marvin D, Senger M, Greenwood M, Carver T, Glover K, Pocock MR, Wipat A, Li P. Taverna: A tool for the composition and enactment of bioinformatics workflows. Bioinformatics 2004, 20(17), 3045-3054.
Andras P. A Model for Emergent Complex Order in Small Neural Networks. Journal of Integrative Neuroscience 2003, 2(1), 55-69.
Stevens R, Wroe C, Bechhofer S, Lord P, Rector A, Goble C. Building ontologies in DAML + OIL. Comparative and Functional Genomics 2003, 4(1), 133-141.
Andras P. Comparing neurophysiological measurements of simulated and real brains. Neurocomputing 2003, 52-54, 677-682.
Bechhofer S, Volz R, Lord P. Cooking the semantic web with the OWL API. In: The Semantic Web: Second International Semantic Web Conference (ISWC 2003). 2003, Sanibel Island, FL, USA: Springer-Verlag.
Andras P, Kozma R, Erdi P. Editorial. Journal of Integrative Neuroscience 2003, 2(1), 1-2.
Andras P, Roberts G, Lazarus J. Environmental risk, cooperation, and communication complexity. In: Alonso E; Kudenko D; Kazakov D, ed. Adaptive agents and multi-agent systems : adaptation and multi-agent learning. Berlin: Springer, 2003, pp.558-560.
Kobayashi K, Ehrlich SD, Albertini A, Amati G, Andersen KK, Arnaud M, Asai K, Ashikaga S, Aymerich S, Bessieres P, Boland F, Brignell SC, Bron S, Bunai K, Chapuis J, Christiansen LC, Danchin A, Debarbouille M, Dervyn E, Deuerling E, Devine K, Devine SK, Dreesen O, Errington J, Fillinger S, Foster SJ, Fujita Y, Galizzi A, Gardan R, Eschevins C, Fukushima T, Haga K, Harwood CR, Hecker M, Hosoya D, Hullo MF, Kakeshita H, Karamata D, Kasahara Y, Kawamura F, Koga K, Koski P, Kuwana R, Imamura D, Ishimaru M, Ishikawa S, Ishio I, Le Coq D, Masson A, Mauel C, Meima R, Mellado RP, Moir A, Moriya S, Nagakawa E, Nanamiya H, Nakai S, Nygaard P, Ogura M, Ohanan T, O'Reilly M, O'Rourke M, Pragai Z, Pooley HM, Rapoport G, Rawlins JP, Rivas LA, Rivolta C, Sadaie A, Sadaie Y, Sarvas M, Sato T, Saxild HH, Scanlan E, Schumann W, Seegers JFML, Sekiguchi J, Sekowska A, Seror SJ, Simon M, Stragier P, Studer R, Takamatsu H, Tanaka T, Takeuchi M, Thomaides HB, Vagner V, Van Dijl JM, Watabe K, Wipat A, Yamamoto H, Yamamoto M, Yamamoto Y, Yamane K, Yata K, Yoshida K, Yoshikawa H, Zuber U, Ogasawara N. Essential Bacillus subtilis genes. Proceedings of the National Academy of Sciences 2003, 100(8), 4678-4683.
Addis M, Ferris J, Greenwood M, Li P, Marvin D, Oinn T, Wipat A. Experiences with e-Science workflow specification and enactment in bioinformatics. In: UK e-Science All Hands Meeting 2003. 2003, Nottingham, UK: Engineering and Physical Sciences Research Council.
Harwood CR, Wipat A, Prágai Z. Functional analysis of the Bacillus subtilis genome. In: Wren, B. and Dorrell, N, ed. Functional Microbial Genomics. London: Academic Press, 2003, pp.337-367.
Lord PW, Stevens RD, Brass A, Goble CA. Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 2003, 19(10), 1275-1283.
Lord P, Wroe C, Stevens R, Goble C, Miles S, Moreau L, Decker K, Payne T, Papay J. Semantic and personalised service discovery. In: UK e-Science All Hands Meeting 2003. 2003, Nottingham, UK: EPSRC.
Lord PW, Stevens RD, Brass A, Goble CA. Semantic Similarity Measures as Tools for Exploring the Gene Ontology. In: Biocomputing 2003: Proceedings of the Pacific Symposium. 2003, Kauai, Hawaii: World Scientific.
Idowu OC, Lynden SJ, Periorellis P, Young MP, Andras P. Software Suite to Aid Protein Target Identification for Rational Drug Discovery (Extended abstract). In: Cold Spring Harbour Laboratory and Wellcome Trust Conference on Pharmacogenomics. 2003, Hinxton, UK: Wellcome Trust.
Charlton BG, Andras P. What is Management and What Do Managers Do ? A Systems Theory Account. Philosophy of Management 2003, 3(3), 3-16.
Charlton BG, Andras P. A System Poisoned by Deceit. Times Higher Education Supplement 2002.
Harwood CR, Wipat A. Bacterial protein synthesis. In: Sussman, M, ed. Molecular Medical Microbiology. San Diego: Academic Press, 2002, pp.321-388.
Lord PW, Selley JN, Attwood TK. CINEMA-MX: A modular multiple alignment editor. Bioinformatics 2002, 18(10), 1402-1403.
Andras P, Charlton BG. Commentary on Sweeney & Kernick (2002), clinical evaluation: Constructing a new model for post-normal medicine. Journal of evaluation in clinical practice 8, 131-138. Journal of Evaluation in Clinical Practice 2002, 8(2), 143-144.
Andras P, Roberts G, Lazarus J. Communication Complexity, Environmental Risk, and Cooperation. In: 2nd Symposium on Autonomous Agents and Multi-Agent Systems (AAMAS). 2002, Bologna, Italy: World Scientific Publishing.
Andras P. Computation with Chaotic Patterns. Neurocomputing (Special Issue on Computational Neuroscience: Trends in Research 2002) 2002, 44, 263-268.
Andras P, Charlton BG. Democratic deficit and communication hyper-inflation in health care systems. Journal of Evaluation in Clinical Practice 2002, 8(3), 291-297.
Andras P, Charlton BG. Hype and Spin in the NHS. The British Journal of General Practice 2002, 52(479), 520-521.
Andras P, Charlton BG. Hype and Spin in the Universities. Oxford Magazine 2002, (202), 5-6.
Andras P. Kernel-Kohonen Networks. International Journal of Neural Systems 2002, 12(2), 117-136.
Andras P. Spectrum-based Design of Sinusoidal RBF Neural Networks. In: INNS: IEEE International Joint Conference on Neural Networks (IJCNN) part of the IEEE World Congress on Computational Intelligence. 2002, Honolulu, Hawaii, USA: IEEE Press.
Andras P. The equivalence of support vector machine and regularization neural networks. Neural Processing Letters 2002, 15(2), 97-104.
Andras P, Panzeri S, Young MP. Towards Statistically Valid Population Decoding Models. Neurocomputing: Special Issue on Computational Neuroscience, Trends in Research 2002, 44-46(1-2), 269-274.
Andras P, Charlton BG. Unhealthy Hype. London, UK: spiked, 2002. Available at: http://www.spiked-online.com/index.php/site/article/9262/.
Andras P. Artificial Neural Networks for Approximation and Time Series Prediction. Cluj: Presa Universitara, 2001.
Andras P. Computation with Chaotic Patterns. In: Computational neuroscience: trends in research, 2002. 2001, San Francisco and Pacific Grove, California, USA: Elsevier Health Sciences.
Harwood CR, Crawshaw SG, Wipat A. From genome to function: Systematic analysis of the soil bacterium Bacillus subtilis. Comparative and Functional Genomics 2001, 2(1), 22-24.
Harwood CR, Wipat A. Genome management and analysis: prokaryotes. In: Ratledge, C. and Kristiansen, B, ed. Basic Biotechnology. Cambridge: Cambridge University Press, 2001, pp.73-118.
Andras P, Postma E, Van Den Herik J. Natural dynamics and neural networks: Searching for efficient preying dynamics in a virtual world. Journal of Intelligent Systems 2001, 11(3), 173-202.
Lord PW, Reich J R, Mitchell A et al. PRECIS: An automated pipeline for producing concise reports about proteins. In: 2nd Annual IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2001). 2001, Bethesda, Maryland: IEEE Computer Society.
Andras P. RBF Neural Networks with Orthogonal Basis Functions. In: Howlett, RJ and Jain, LC, ed. Radial Basis Function Networks 1: Recent Developments in Theory and Applications. New York: Physica-Verlag, 2001, pp.67-94.
Andras P. The Role of Brain Chaos. In: Wermter, S, Austin, J and Willshaw, D, ed. Emergent Neural Computational Architectures Based on Neuroscience: Towards Neuroscience-Inspired Computing. Berlin: Springer-Verlag, 2001, pp.296-310.
Andras P. The Sierpinski Brain. In: IEEE International Joint Conference on Neural Networks (IJCNN 2001). 2001, Washington DC, USA: IEEE.
András P, Panzeri S, Young MP. Towards Statistically Valid Population Decoding Models. In: Computational neuroscience: trends in research, 2002. 2001, San Francisco and Pacific Grove, California, USA: Elsevier Health Sciences.
Andras P. Approximation of Chaotic Shapes with Tree-Structured Neural Networks. In: INNS - IEEE International Joint Conference on Neural Networks (IJCNN '99). 1999, Washington DC, USA: IEEE Press.
Andras P. Comment to the discussion by Gusztav Molnar. In: Bakk, M, Szekely, I, and Toro, TT, ed. On Midway: Stills of the Reform of the Transylvanian Hungarian Politics. Pro-Print, Csikszereda, Romania, 1999, pp.370-375.
Andras P, Postma E, Van den Herik J. Dealing with Environmental Dynamics. In: 11th Belgium-Dutch Artificial Intelligence Conference (BNAIC '99). 1999, Maastricht University, Netherlands.
Andras P. Orthogonal RBF Neural Network Approximation. Neural Processing Letters 1999, 9(2), 141-151.
Andras P. Selection of RBF Neural Networks with a Combined Evolutionary and Back-propagation Method. Cluj, Romania: Babes-Bolyai University, 1999. Preprint of Department of Mathematics and Computer Science.
Wipat A, Harwood CR. The Bacillus subtilis genome sequence: The molecular blueprint of a soil bacterium. FEMS Microbiology Ecology 1999, 28(1), 1-9.
Opre A, Andras P. Amnesia: Neuropshychological Interpretation and Artificial Neural Network Simulation. Cognition, Brain, Behavior 1998, 2(3-4), 315-335.
András P, András A. Comparison of Evolutionary Selection Methods for RBF Neural Networks. In: Romanian Symposium on Computer Science (ROSYCS). 1998, Faculty of Computer Science, 'A.I. Cuza' University, Iasi, Romania.
Opre A, Andras P. Modelling Amesic Syndrome with Artificial Neural Networks. In: International Conference on Automation and Quality Control. 1998, Cluj-Napoca, Romania.
Andras P. Neural Network Design Using Spectral Analysis. In: 5th International Conference on Neural Information Processing (ICONIP), in conjunction with the Annual Conference of the Japanese Neural Network Society (JNNS). 1998, Kitakyushu, Japan: Ohmsha/IOS Press.
Wipat A, Brignell SC, Guy BJ, Rose M, Emmerson PT, Harwood CR. The yvsA-yvqA (293°-289°) region of the Bacillus subtilis chromosome containing genes involved in metal ion uptake and a putative sigma factor. Microbiology 1998, 144(6), 1593-1600.
Fnlmerson P-I, Brignell C, Wipat A, Cartez N, Pragia Z, Guy BJ, Harwood CR. A putative DNA repair operon in B. subtilis comprising a gene encoding a DNA repair polymerase, a routs homolog and an unidentified. FASEB Journal 1997, 11(9), A1368-.
Gothel SF, Schmid R, Wipat A, Carter NM, Emmerson PT, Harwood CR, Marahiel MA. An internal FK506-binding domain is the catalytic core of the prolyl isomerase activity associated with the Bacillus subtilis trigger factor. European Journal of Biochemistry 1997, 244(1), 59-65.
Andras P. Approximation of Fractals with Neural Networks. Studia Universitatis Babes-Bolyai: Mathematica 1997, 42(1), 15-23.
Andras P. Knowledge Representation in Artificial Neural Networks. Annales Universitatis Occidentalis Timisiensis, Philosophia 1997, IX, 173-185.
Andras P. Neural Networks for Decision Modelling. Brain, Cognition, Behaviour 1997, 1(1), 10-36.
Andras P. Systematic Development of WWW Pages. In: 1997 Romanian Internet Learning Workshop (RILW '97). 1997, Ilieni, Romania.
Andras P, Andras A, Szabo Z. A Genetic Solution for the Cutting Stock Problem. In: 1st Online Workshop on Soft Computing (WSC1). 1996, Nagoya, Japan: Nagoya University.
Andras P. A Tree-Structured Artificial Neural Network Applied for Chaotic Time series Prediction. In: Artificial Intelligence: Methodology, Systems, Applications (AIMSA '96). 1996, Sozopol, Bulgaria: IOS Press.
Andras P. Approximation of Functions with Tree-Structured Neural Networks. In: International Conference on Approximation. 1996, Cluj-Napoca, Romania.
Andras P. Increasing the Performance of Artificial Neural Networks Using Fuzzy Data. Cluj, Romania: Babes-Bolyai University, 1996. Preprint of Department of Mathematics and Computer Science.
Andras P. Modeling the Development of the Concept System. Studia Universitatis Babes-Bolyai: Mathematica 1996, 41(1), 107-122.
Gerth U, Wipat A, Harwood CR, Carter N, Emmerson PT, Hecker M. Sequence and transcriptional analysis of clpX, a class-III heat-shock gene of Bacillus subtilis. Gene 1996, 181(1-2), 77-83.
Harwood CR, Wipat A. Sequencing and functional analysis of the genome of Bacillus subtilis strain 168. FEBS Letters 1996, 389(1), 84-87.
Wipat A, Carter N, Brignell SC, Guy BJ, Piper K, Sanders J, Emmerson PT, Harwood CR. The dnaB-pheA (256°-240°) region of the Bacillus subtilis chromosome containing genes responsible for stress responses, the utilization of plant cell walls and primary metabolism. Microbiology 1996, 142(11), 3067-3078.
Andras P. The Minority Question - A Game Theory and Micro Economic Approach. Web - The Journal of the Max Weber Special Sociology College 1996, (1), 56-74.
Andras P. Tuning Fuzzy Rule Bases with a Genetic Algorithum. In: 10th Romanian Symposium on Computer Science (ROSYCS). 1996, Iasi, Romania: Faculty of Computer Science, 'A.I. Cuza' University.
Wipat A, Wellington EMH, Saunders VA. Monoclonal antibodies for Streptomyces lividans and their use for immunomagnetic capture of spores from soil. Microbiology 1994, 140(8), 2067-2076.
Saunders VA, Wellington EMH, Wipat A. Detection of Streptomyces marker plasmids in soil. In: 2nd International Conference on the Release of Genetically-engineered Micro-organisms (REGEM 2): Release of Genetically Modified Microorganisms. 1992, Nottingham, England: Kluwer Academic/Plenum Publishers.
Wipat A, Wellington EM, Saunders VA. Detection systems for streptomycetes. In: Wellington, E.M.H. and van Elsas, J.D, ed. Genetic Interactions Among Microorganisms in the Natural Environment. Oxford: Pergamon Press, 1992, pp.83-90.
Wipat A, Wellington EMH, Saunders VA. Streptomyces marker plasmids for monitoring survival and spread of streptomycetes in soil. Applied and Environmental Microbiology 1991, 57(11), 3322-3330.
Wellington EMH, Cresswell N, Herron PR , Wipat A. Gene transfer between streptomycetes in soil. In: Fry, J.C. and Day, M.J, ed. Bacterial Genetics in Natural Environments. London: Chapman and Hall, 1990, pp.216-230.
Wellington EMH, Saunders VA, Cresswell N, Wipat A. Plasmid transfer between streptomycetes in soil. In: 7th International Symposium on Biology of Actinomycetes (ISBA 1988). 1988, Tokyo: Japan Scientific Societies Press.