People - Institute of Neuroscience - Newcastle University

Dr Phillip Lord
Lecturer

Email: phillip.lord@ncl.ac.uk
Telephone: +44 (0) 191 222 7827
Personal Website: http://www.cs.ncl.ac.uk/people/Phillip.Lord

Publications

Weile J, James K, Hallinan J, Cockell SJ, Lord P, Wipat A, Wilkinson DJ. Bayesian integration of networks without gold standards. Bioinformatics 2012, (epub ahead of print).
Quinn TA, Granite S, Allessie MA, Antzelevitch C, Bollensdorff C, Bub G, Burton RAB, Cerbai E, Chen PS, Delmar M, DiFrancesco D, Earm YE, Efimov IR, Egger M, Entcheva E, Fink M, Fischmeister R, Franz MR, Garny A, Giles WR, Hannes T, Harding SE, Hunter PJ, Iribe G, Jalife J, Johnson CR, Kass RS, Kodama I, Koren G, Lord P, Markhasin VS, Matsuoka S, McCulloch AD, Mirams GR, Morley GE, Nattel S, Noble D, Olesen SP, Panfilov AV, Trayanova NA, Ravens U, Richard S, Rosenbaum DS, Rudy Y, Sachs F, Sachse FB, Saint DA, Schotten U, Solovyova O, Taggart P, Tung L, Varro A, Volders PG, Wang K, Weiss JN, Wettwer E, White E, Wilders R, Winslow RL, Kohl P. Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing. Progress in Biophysics & Molecular Biology 2011, 107(1), 4-10.
Lord P. An evolutionary approach to Function. Journal of Biomedical Semantics 2010, 1(s1), s4.
Lord P, Stevens R. Ontogenesis - An Ontology Tutorial. Newcastle University, Newcastle upon Tyne, UK: Knowledgeblog Project, 2010. Available at: http://dx.doi.org/10.4124/A34124.
Lister AL, Lord P, Pocock M, Wipat A. Annotation of SBML Models Through Rule-Based Semantic Integration. In: 12th Annual Bio-Ontologies Meeting colocated with ISMB. 2009, Stockholm, Sweden: Intelligent Systems for Molecular Biology.
Jones AR, Lister AL, Hermida L, Wilkinson P, Eisenacher M, Belhajjame K, Gibson F, Lord P, Pocock M, Rosenfelder H, Santoyo-Lopez J, Wipat A, Paton NW. Modeling and Managing Experimental Data Using FuGE. OMICS: A Journal of Integrative Biology 2009, 13(3), 239-251.
Brinkman R, Bug B, Causton H, Clancy K, Cocos C, Courtot M, Derom D, Deutsch E, Fan L, Field D, Fostel J, Fragaso G, Gibson F, Gray T, Greenbaum J, Grenom P, Grethe J, He Y, Heiskanen M, Hernandez-Boussard T, Lord P, Lister AL, Malone J, Manduchi E, Montecchi L, Morrison N, Mungall C, Parkinson H, Peters B, Pocock M, Rocca-Serra P, Rubin D, Ruttenberg A, Sansone S-A, Scheuermann R, Schober D, Smith B, Soldatova LN, Stenzhorn H, Stoeckert C, Taylor C, Vita R, Westbrook J, White J, Whetzel PL, Wiemann S, Zheng J. Modeling biomedical experimental processes with OBI. In: 12th Annual Bio-Ontologies Meeting, ISMB/ECCB 2009. 2009, Stockholm, Sweden: Intelligent Systems for Molecular Biology.
Watson P, Lord P, Gibson F, Periorellis P, Pitsilis G. Cloud Computing for e-Science with CARMEN. In: Proceedings of the 2nd Iberian Grid Infrastructure (IBERGRID). 2008, Porto, Portugal: Netbiblo.
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen M, Angiuoli S, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, Depamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner F, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis S, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone S, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A. The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology 2008, 26(5), 541-547.
Merelli E, Armano G, Cannata N, Corradini F, d'Inverno M, Doms A, Lord P, Martin A, Milanesi L, Moller S, Schroeder M, Luck M. Agents in bioinformatics, computational and systems biology. Briefings in Bioinformatics 2007, 8(1), 45-59.
Goble C, Wolstencroft K, Goderis A, Hull D, Zhao J, Alper P, Lord P, Wroe C, Belhajjame K, Turi D, Stevens R, Oinn T, De Roure D. Knowledge discovery for biology with Taverna: Producing and consuming semantics in the Web of Science. In: Baker, C.J.O., Cheung, K.-H., ed. Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences. New York, USA: Springer, 2007, pp. 355-395.
Watson P, Jackson T, Pitsilis G, Gibson F, Austin J, Fletcher M, Liang B, Lord P. The CARMEN Neuroscience Server. In: Proceedings of the UK e-Science All Hands Meeting. 2007, Nottingham, UK: National e-Science Centre.
Watson P, Jackson T, Pitsilis G, Gibson F, Austin J, Fletcher M, Liang B, Lord P. The CARMEN Neuroscience Server. Newcastle upon Tyne: School of Computing Science, University of Newcastle upon Tyne, 2007. School of Computing Science Technical Report Series 1042.
Aranguren ME, Bechhofer S, Lord P, Sattler U, Stevens R. Understanding and using the meaning of statements in a bio-ontology: Recasting the Gene Ontology in OWL. BMC Bioinformatics 2007, 8(57).
Stevens R, Lord P, Hull D. Using distributed data and tools in bioinformatics applications. In: Lengauer, T., ed. The Holy Grail: Molecular Function. Weinheim: Wiley, VCH, 2007, pp. 1627-1650.
Craddock T, Lord P, Harwood C, Wipat A. e-science tools for the genomic scale characterisation of bacterial secreted proteins. In: Proceedings of the UK e-Science All Hands Meeting 2006. 2006, Nottingham, UK: National e-Science Centre.
Bechhofer SK, Stevens RD, Lord PW. GOHSE: Ontology Driven Linking of Biology Resources. Journal of Web Semantics 2006, 4(3), 155-163.
Wolstencroft K, Lord P, Tabernero L, Brass A, Stevens R. Protein classification using ontology classification. In: 14th Conference on Intelligent Systems for Molecular Biology (ISMB 2006). 2006, Fortaleza, Brazil: Bioinformatics: Oxford University Press.
Oinn T, Greenwood M, Addis M, Alpdemir MN, Ferris J, Glover K, Goble C, Goderis A, Hull D, Marvin D, Li P, Lord P, Pocock MR, Senger M, Stevens R, Wipat A, Wroe C. Taverna: lessons in creating a workflow environment for the life sciences. Concurrency and Computation: Practice and Experience 2006,18 10 1067-1100.
Wolstencroft K, Brass A, Horrocks I, Lord P, Sattler U, Turi D, Stevens R. A Little Semantic Web Goes a Long Way in Biology. In: The Semantic Web: 4th International Semantic Web Conference (ISWC 2005). 2005, Galway, Ireland: Springer-Verlag.
Lord P, Stevens RD, Goble CA, Horrocks I. Description Logics: OWL and DAML+OIL. In: Dunn, M.J. et al., ed. Encyclopedia of Genetics, Genomics, Proteomics, and Bioinformatics. Chichester: John Wiley, 2005.
Lord P, Alper P, Wroe C, Goble C. Feta: A light-weight architecture for user oriented semantic service discovery. In: The Semantic Web: Research and Applications: Second European Semantic Web Conference (ESWC 2005). 2005, Heraklion, Crete, Greece: Springer-Verlag.
Bechhofer SK, Stevens RD, Lord PW. Ontology Driven Dynamic Linking of Biology Resources. In: Pacific Symposium on Biocomputing 2005. 2005, Hawaii, USA: World Scientific.
Wolstencroft K, Oinn T, Goble C, Ferris J, Wroe C, Lord P, Glover K, Stevens R. Panoply of Utilities in Taverna. In: First International Conference on e-Science and Grid Computing. 2005, Melbourne, Australia: IEEE Computer Society.
Garwood K, Lord P, Parkinson H, Paton NW, Goble C. Pedro ontology services: A framework for rapid ontology markup. In: The Semantic Web: Research and Applications: Second European Semantic Web Conference (ESWC 2005). 2005, Heraklion, Crete, Greece: Springer-Verlag.
Goderis A, Sattler U, Lord P, Goble C. Seven bottlenecks to workflow reuse and repurposing. In: The Semantic Web: 4th International Semantic Web Conference (ISWC 2005). 2005, Galway, Ireland: Springer-Verlag.
Zhao J, Lord P, Alper P, Wroe C, Goble C. The implications of Semantic Web technologies for support of the e-science process. In: UK e-Science All Hands Meeting 2005. 2005, Nottingham, UK: EPSRC.
Stevens R, Lord P. Application of Ontologies in Bioinformatics. In: Staab, S and Studer, R, ed. Handbook on Ontologies. Berlin: Springer-Verlag, 2004, pp. 735-756.
Lord P, Bechhofer S, Wilkinson MD, Schiltz G, Gessler D, Hull D, Goble C, Stein L. Applying semantic web services to bioinformatics: Experiences gained, lessons learnt. In: The Semantic Web: Third International Semantic Web Conference (ISWC 2004). 2004, Hiroshima, Japan: Springer-Verlag.
Wroe C, Goble C, Greenwood M, Lord P, Miles S, Papay J, Payne T, Moreau L. Automating experiments using semantic data on a bioinformatics grid. IEEE Intelligent Systems 2004, 19(1), 48-55.
Stevens RD, Tipney HJ, Wroe CJ, Oinn TM, Senger M, Lord PW, Goble CA, Brass A, Tassabehji M. Exploring Williams-Beuren Syndrome Using myGrid. In: 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology. 2004, Glasgow, UK: Bioinformatics: Oxford University Press.
Stevens RD, Tipney HJ, Wroe CJ, Oinn TM, Senger M, Lord PW, Goble CA, Brass A, Tassabehji M. Genome science performed with e-science tools. In: UK e-Science All Hands Meeting 2004. 2004, Nottingham, UK: EPSRC.
Wroe C, Lord P, Miles S et al. Recycling services and workflows through discovery and reuse. In: UK e-Science All Hands Meeting 2004. 2004, Nottingham, UK: EPSRC.
Stevens R, Wroe C, Bechhofer S, Lord P, Rector A, Goble C. Building ontologies in DAML + OIL. Comparative and Functional Genomics 2003, 4(1), 133-141.
Bechhofer S, Volz R, Lord P. Cooking the semantic web with the OWL API. In: The Semantic Web: Second International Semantic Web Conference (ISWC 2003). 2003, Sanibel Island, FL, USA: Springer-Verlag.
Lord PW, Stevens RD, Brass A, Goble CA. Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 2003, 19(10), 1275-1283.
Lord P, Wroe C, Stevens R, Goble C, Miles S, Moreau L, Decker K, Payne T, Papay J. Semantic and personalised service discovery. In: UK e-Science All Hands Meeting 2003. 2003, Nottingham, UK: EPSRC.
Lord PW, Stevens RD, Brass A, Goble CA. Semantic Similarity Measures as Tools for Exploring the Gene Ontology. In: Biocomputing 2003: Proceedings of the Pacific Symposium. 2003, Kauai, Hawaii: World Scientific.
Lord PW, Selley JN, Attwood TK. CINEMA-MX: A modular multiple alignment editor. Bioinformatics 2002, 18(10), 1402-1403.
Lord PW, Reich J R, Mitchell A et al. PRECIS: An automated pipeline for producing concise reports about proteins. In: 2nd Annual IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2001). 2001, Bethesda, Maryland: IEEE Computer Society.

Newcastle University

Institute of Neuroscience

Dr Phillip Lord Lecturer

Dr Phillip Lord
Lecturer