Centre for Synthetic Biology and the Bioeconomy

Staff Profile

Professor Hans-Peter Klenk

Professor of Microbial Genomics and Diversity

Background

Hans-Peter Klenk qualified with a Master’s degree in Biochemistry (Eberhard Karls University Tübingen) and a PhD in Microbiology (Ludwig Maximilians University München and Max Planck Institute of Biochemistry).  His initial research interests were focussed on the early evolution of the three domains of life, Archaea, Bacteria and Eukaryotes, with a special emphasis on diversity and discovery of novel extremophilic archaea and DNA-dependent RNA polymerases as molecular markers for phylogenetic analyses. With first positions in Canada and the US he contributed to the advancement of microbial genomics and later pioneered the use of genomic information for microbial systematics during private lecturer positions at Darmstadt University of Technology and Braunschweig University of Technology (2001-2014). From 2007 till his appointment at Newcastle University he directed an outstanding research team (What’s hot in Biology) which guided Europe’s largest Biological Resource Centre into the genomic era. Much of this research was performed in close collaboration with the team around Nikos Kyrpides at the DOE Joint Genome Institute in Walnut Creek, CA, and earned world-wide attention (Cataloging the Vast World of Microbes, in an Encyclopedia - The New York Times).

Publication metrics for 512 peer-review papers can be followed at PubMed and Google Scholar. H-index = 60.


Appointments, Academia

2014-2017  Head of School of Biology, Newcastle University, Newcastle upon Tyne  

2007-2014 Head of Department Microorganisms (till 2011 Department Microbiology) Leibniz Institute DSMZ (until 2011 DSMZ), Braunschweig, Germany - one of the leading bioresource centers worldwide
1998 Lab Director of Göttingen Genomics Laboratory at Georg August University Göttingen, directed setup of microbial genomics unit
1996-1997 Associate Investigator at The Institute for Genomic Research (TIGR), Rockville, MD  (since 2006 J Craig Venter Institute) - first completed microbial genome sequences
1994-1996 Postdoctoral Research Fellow with W. Ford Doolittle at Dalhousie University,
     Halifax, Nova Scotia   - first archaeal genome sequencing project

Industrial Experience

2002-2007 Founder and Chief Scientific Officer of e.gene Biotechnologie Ltd., Feldafing, Germany
a start-up bioinformatics company in microbial genomics
1999-2002 Head of Department, VP Genomics and Computational Genetics at EPIDAUROS Biotechnologie AG, Bernried, Germany a start-up biotechnology company in pharmacogenetics

Accolades

2015 Elected fellow of the Royal Society of Biology
2015 Elected fellow of the American Academy for Microbiology
2014 Bergey Award  in recognition of outstanding contributions to bacterial taxonomy
2010 Honorary member of the Association of Microbiologists of India
2009 Honorary member of the Hungarian Society for Microbiology

Editorial Boards

2014- life, Board Member, Editor of special issue Archaea (November 2014)
2009-  Archaea, Board Member
2009-  Standards in Genomic Sciences, Associate Editor, since 2014 Senior Editor
2009-2014 BioMed Research International, Board Member
2001-2011 Microbiology, Associate Editor
2000-2012 Extremophiles, Board Member

Societies

2010- Bergey's Intern. Society for Microbial Systematics, BISMiS, lifetime member
2001-2010 The International Society for Extremophiles, ISE
2001-2010 Society for General Microbiology, SGM
1998-2012 Association for General and Applied Microbiology, VAAM
1997-1999 American Association for the Advancement of Science, AAAS
1996-  American Society for Microbiology, ASM   with interruption 2009- 2013
1994-2000 International Society of Molecular Evolution, ISME
1992-2002 German Society for Biochemistry and Molecular Biology, GBM
1991-2011 German Classification Society, GfKl/IFCS

Academic Leadership

2014-2017 Member of the Faculty Executive Board, SAgE
2014-2017 Chair of School Executive Board, School of Biology
2012- Member working group ‘Origin of LifeGöttingen Academy of Sciences and Humanities
2012-2014 Member DSMZ committee of compatibility of occupation and family (buf), responsible for information and communication
2007  Member ‘Microbial Genomics Panel’ National Science Foundation, NSF
20001  Member Planning Committee for Bioinformatics University of Applied Sciences Upper Austria
2000-2004 Member Project Management Team The European Sulfolobus Project, EU FP5 2000-2004
1999-2009 Vice chair working party ‘Classification in Biology’ German Classification Society, GfKl, reelected biannually
1998  Member steering committee ‘Microbial Genomics Networks of Competence’, GenoMik
1998-2011 Convenor working party ‘Functional Genomics’ Association for General and Applied Microbiology, VAAM, biannually reelected
1997-1998 Member external reviewing panel ’Biologically active Materials’ Idaho National Engineering & Environmental Laboratory, INEEL

Oral Presentations

More than 180 invited presentations at conferences and seminars in 24 countries (in alphabetic sequence):

Austria 1×, Brasil 2×, Canada 5×, China 10×, France 4×, Germany 86×, Greece 3×,  Hungary 2×, India 9×, Italy 1×, Iran 2x, Japan 5×, Kenya 3×, Malaysia 4×, Norway 1×, Pakistan 1×, Portugal 1×, Saudi Arabia 1×,  Spain 1×,  Sweden 1×,  Swiss 3×,  Tunisia 1×,  Turkey 3×, United Kingdom 9×, USA 24×

Selected presentations

The role of culture collections and DNA banks in the Genomic Encyclopedia for Bacteria and Archaea @ WFCC ICCC-12, Biological Resources Centers: gateway to biodiversity and services for innovation in biotechnology. Florianopolis, Brasil, September 2010
Lead plenary lecture: The microbial Earth exploration projects @ 51st Association of Microbiologists of India (AMI) Conference. Ranchi, India, December 2010
The role of culture collections and DNA banks for large scale genomics @ IUMS 2011 - The unlimited world of microbes. Sapporo, Japan, September 2011
En route to a genome-based classification of microorganisms with a Genomic Encyclopedia of Bacteria and Archaea @ Malaysian Palm Oil Board - Microbial Biodiversity Workshop. Kuala Lumpur, Malaysia, April 4th, 2013
Research and service functions at DSMZ @ 16th Conference in genomics and proteomics of human pathogens. Public Health England, Colindale, London, UK, June 27th, 2013
The role of microbial culture collections in diversity research and biotech industry @ DAAD-HEC International Summer School Food Security in Times of Climate Change. COMSATS Institute of Information Technology (CIIT), Islamabad, Pakistan, November 2nd, 2013
Genomes and the Species Concept: A culture collection perspective including animal and
environmental strains of Mycobacterium species @ A New Era in Diagnostic Microbiology. The Royal College of Pathologists, London, UK, January 15th, 2014
Keynote: The genomic encyclopedia of Bacteria and Archaea project and its use for microbial taxonomy @ BISMiS-2014; Defining Microbial Diversity in the Genomic Era, Edinburgh, UK, May 7th, 2014

I’m open to informal enquiries for (primarily self-funded) PhD candidates and post-doctoral research fellows. Please feel free to contact me via Email.

Graduate Students

Ali Budhi Kasuma, Actinomycetes Diversity from Indonesian extreme Environments as a source of novel antimicrobial drug leads

Postdoctoral Research Fellows

Dr Imen Noioui, Diversity of Frankiales and Mycobacterium spp. nov.

Area of Expertise

Microbial Genomics and Diversity 

SCOPUS

 

Research

The major themes in my research interests are actinomycetes and archaea, in particular extremophilic organisms, e.g. (extreme) thermophiles and xerophiles. Organisms are examined with genomics, functional genomics and phenotyping approaches to study their systematics in a holistic view, but also for (bio-)technological usage.

The main ongoing research projects are:

• The Genomic Encyclopaedia of Archaea and Bacteria (with JGI)
• The 1000 Actinomycete genomes project (with JGI and DSMZ)
• Biodiversity in deserts (current focus: North African Sahara, with Laboratoire de Biologie des Systemes Microbiens, Ecole Normale Superieure de Kouba, Alger, Algeria)

Publications

  • Aouiche A, Bouras N, Mokrane S, Zitouni A, Schumann P, Spröer C, Sabaou N, Klenk HP. Actinokineospora mzabensis sp. nov., a novel actinomycete isolated from Saharan soil. Antonie van Leeuwenhoek 2015, 107(1), 291-296.
  • Saker R, Bouras N, Meklat A, Zitouni A, Schumann P, Spröer C, Klenk HP, Sabaou N. Actinopolyspora biskrensis sp. nov., a Novel Halophilic Actinomycete Isolated from Northern Sahara. Current Microbiology 2015, 70(3), 423-428.
  • Akhwale JK, Goker M, Rohde M, Schumann P, Klenk HP, Boga HI. Belliella kenyensis sp. nov., isolated from the alkaline lake. International Journal of Systematic and Evolutionary Microbiology 2015, 65(2), 457-462.
  • Bouras N, Meklat A, Zitouni A, Mathieu F, Schumann P, Spröer C, Sabaou N, Klenk HP. Nocardiopsis algeriensis sp. nov., an alkalitolerant actinomycete isolated from Saharan soil. Antonie van Leeuwenhoek 2015, 107(2), 313-320.
  • Saker R, Bouras N, Meklat A, Zitouni A, Schumann P, Spröer C, Sabaou N, Klenk HP. Prauserella isguenensis sp. nov., a halophilic actinomycete isolated from desert soil. International Journal of Systematic and Evolutionary Microbiology 2015, 65(5), 1598-1603.
  • Hamdali H, Virolie MJ, von Jan M, Spröer C, Klenk H-P, Ouhdouch Y. Streptomyces youssoufiensis sp. nov., isolated from a Moroccan phosphate mine. International Journal of Systematic and Evolutionary Microbiology 2011, 61, 1104-1108.
  • Hania WB, Joseph M, Schumann P, Bunk B, Fiebig A, Sproer C, Klenk HP, Fardeau ML, Spring S. Complete genome sequence and description of Salinispira pacifica gen. nov., sp. nov., a novel spirochaete isolated form a hypersaline microbial mat. Standards in Genomic Sciences 2015, 10(7), 1-14.
  • Sikorski J, Lapidus A, Chertkov O, Lucas S, Copeland A, GlavinaDelRio T, Nolan M, Tice H, Cheng JF, Han C, Brambilla E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Bruce D, Detter C, Tapia R, Goodwin L, Chen A, Palianiappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Göker M, Spring S, Wojke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288T). Standards in Genomic Sciences 2010, 3, 57-65.
  • Saunders E, Tindall BJ, Fahnrich R, Lapidus A, Copeland A, GlavinaDelRio T, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Chain P, Pitluck S, Pati A, Ivanova N, Mavrommatis K, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Haloterrigena turkmenica type strain (4kT). Standards in Genomic Sciences 2010, 2(1), 107-116.
  • Sikorski J, Teshima H, Nolan M, Lucas S, Hammon N, Despande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntermann M, Mavromatis K, Ovchinikova G, Pati A, Tapia R, Han C, Goodwin L, Chen A, Palaniappan K, Land M, Hauser L, Ngatchau-Djao OD, Rohde M, Pukall R, Spring S, Abt B, Göker M, Detter JC, Woyke T, Bristow J, Markowitz V, Hugenholtz P, Eisen JA, Kyrpides NC, Klenk HP. Complete genome sequence of Mahella australiensis type strain (50-1 BONT). Standards in Genomic Sciences 2011, 4, 331-341.
  • Ngatchou-Djao OD, Zhang X, Lucas S, Lapidus A, Glavina Del Rio T, Nolan M, Tice H, Chen JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Ovchinnikova G, Pati A, Brambilla E, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Sikorski J, Spring S, Göker M, Detter JC, Woyke T, Bristow J, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1T) . Standards in Genomic Sciences 2010, 3, 267-275.
  • Chertkov O, Copeland A, Lucas S, Lapidus A, Berry KW, Detter JC, Glavina Del Rio T, Hammon N, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin L, Han C, Tapia R, Sounders E, Schmutz J, Brettin T, Larimer F, Land M, Hauser L, Spring S, Rohde M, Kyrpides NC, Ivanova N, Göker M, Beller HR, Klenk HP, Woyke T. Complete genome sequence of Tolumonas auensis type strain (TA 4T). Standards in Genomic Sciences 2011, 5, 112-120.
  • Neupane S, Högberg N, Alström S, Lucas S, Han J, Lapidus A, Cheng JF, Bruce D, Goodwin L, Pitluck S, Peters L, Ovchinnikova G, Lu M, Han C, Detter JC, Tapia R, Fiebig A, Land ML, Hauser L, Kyrpides NC, Ivanova N, Pagani I, Klenk HP, Woyke T, Finlay RD. Complete genome sequence of the repeseed plant-growth promoting Serratia plymuthica strain AS9. Standards in Genomic Sciences 2012, 6, 74-83.
  • Montero-Calasanz MDC, Hezbri K, Göker M, Sghaier H, Rohde M, Spröer C, Schumann P, Klenk HP. Description of gamma radiation-resistant Geodermatophilus dictyosporus sp. nov. to accomodate the not validly named Geodermatophilus obscurus subsp. dictyosporus (Luedemann, 1968). Extremophiles 2015, 19(1), 77-85.
  • Gao XY, Zhi XY, Li HW, Zhou Y, Lapidus A, Han J, Haynes M, Lobos E, Huntemann M, Pati A, Ivanova NN, Mavromatis K, Tindall BJ, Markowitz T, Klenk HP, Kyrpides NC, Li WJ. Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China. Standards in Genomic Sciences 2015, 10(1).
  • Mukherjee S, Lapidus A, Shapiro N, Cheng JF, Han J, Reddy TBK, Huntemann M, Ivanova N, Mikhailova N, Chen A, Palaniappan K, Spring S, Göker M, Markowitz V, Woyke T, Tindall BJ, Klenk HP, Kyrprides NC, Pati A. High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India. Standards in Genomic Sciences 2015, 10(8).
  • Doubetra D, Zitouni A, Bouras N, Schumann P, Sproer C, Klenk HP, Sabaou N. Saccharothrix tamanrassetensis sp. nov., an actinomycete isolated from Saharan soil. International Journal of Systematic and Evolutionary Microbiology 2015.
  • Zhang YJ, Jia M, Ma YC, Lu KY, Tian F, Klenk HP, Zhou Y, Tang SK. Aquisalimonas halophila sp. nov., a moderately halophilic bacterium isolated for a hypersaline mine. International Journal of Systematic and Evolutionary Microbiology 2014, 64(7), 2210-2216.
  • Montero-Calasanz MDC, Goker M, Rohde M, Sproer C, Schumann P, Busse HJ, Schmid M, Klenk HP, Tindall BJ, Camacho M. Chryseobacterium oleae sp. nov., an efficient plant growth promoting bacterium in the rooting induction of olive tree (Olea europaea L.) cuttings and emended descriptions of the genus Chryseobacterium, C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C. taiwanense, C. ureilticum and C. vrystaatense. Systematic and Applied Microbiology 2014, 37(5), 342-350.
  • Bertazzo M, Montero-Calasanz M del C, Martinez-Garcia M, Spröer C, Schumann P, Kroppenstedt RM, Stackebrandt E, Klenk H-P, Fiedler HP. Geodermatophilus brasiliensis sp. nov., isolated from Brazilian soil. International Journal of Systematic and Evolutionary Microbiology 2014, 64(8), 2841-2848.
  • Montero-Calasanz MDC, Hofner B, Goker M, Rohde M, Sproer C, Hezbri K, Gtari M, Schumann P, Klenk HP. Geodermatophilus poikilotrophi sp. nov.: A Multitolerant Actinomycete Isolated from Dolomitic Marble. BioMed Research International 2014, 914767.
  • Yu TT, Yin YR, Zhang YG, Yao JC, Klenk HP, Wang HF, Ming H, Zhou EM, Li WJ. Meiothermus terrae sp. nov., isolated from a geothermally heated soil samplete isolated from Algerian Saharan soil. International Journal of Systematic and Evolutionary Microbiology 2014, 64(Pt 3), 794-798.
  • Saker R, Bouras N, Zitouni A, Ghoul M, Rohde M, Schumann P, Spröer C, Sabaou N, Klenk HP. Mzabimyces algeriensis gen. nov., sp. nov., a halophilic filamentous actinobacterium isolated from a Saharan soil, and proposal of Mzabimycetaceae fam. nov. Antonie van Leeuwenhoek 2014, 106(5), 1021-1030.
  • Ghodhbane-Gtari F, Nouioui I, Salem K, Ktari A, del Carmen Montero-Calasanz M, Tisa LS, Klenk HP, Gtari M. Nocardia casuarinae sp. nov., an actinobacterial endophyte isolated from root nodules of Casuarina glauca. Antonie van Leeuwenhoek 2014, 105(6), 1099-1106.
  • Lasker BA, Bell M, Klenk HP, Sproer C, Schumann P, Brown JM. Nocardia vulneris sp. nov., isolated from wounds of human patients in North America. Antonie van Leeuwenhoek 2014, 106(3), 543-553.
  • Mohammadipanah F, Hamedi F, Spröer C, Montero-Calasanz MDC, Schumann P, Klenk HP. Promicromonospora iranensis sp. nov., an actinobacterium isolated from rhizopheric soil. International Journal of Systematic and Evolutionary Microbiology 2014, 64(9), 3314-3319.
  • Sahin N, Veyisoglu A, Tatar D, Spröer C, Cetin D, Guven K, Klenk H-P. Pseudonocardia cypriaca sp. nov., Pseudonocardia salamisensis sp. nov., Pseudonocardia hierapolitana sp. nov. and Pseudonocardia kujensis sp. nov., isolated from soil. International Journal of Systematic and Evolutionary Microbiology 2014, 64(5), 1703-1711.
  • Meklat A, Bouras N, Zitouni A, Sabaou N, Mathieu F, Schumann P, Spröer C, Klenk HP. Saccharopolyspora ghardaiensis sp. nov., an extremely halophilic actinomycete isolated from Algerian Saharan soil. Journal of Antibiotics 2014, 67(4), 299-303.
  • Meklat A, Bouras N, Riba A, Zitouni A, Mathieu F, Rohde M, Schumann P, Sproer C, Klenk HP, Sabaou N. Streptomonospora algeriensis sp. nov., a halophilic actinomycete isolated from soil in Algeria. Antonie van Leeuwenhoek 2014, 106(2), 287-292.
  • Saricaoglu S, Isik K, Veyisoglu A, Saygin H, Cetin D, Guven K, Spröer C, Klenk HP, Sahin N. Streptomyces burgazadensis sp. nov., isolated from soil. International Journal of Systematic and Evolutionary Microbiology 2014, 64(12), 4043-4048.
  • Tatar D, Guven K, Spröer C, Klenk H-P, Sahin N. Streptomyces iconiensis sp. nov. and Streptomyces smyrnaeus sp. nov., two halotolerent actinomycetes isolated from a salt lake and saltern. International Journal of Systematic and Evolutionary Microbiology 2014, 64(9), 3126-3133.
  • Mohammadipanah F, Hamedi J, Sproer C, Rohde M, Montero-Calasanz MDC, Klenk HP. Streptomyces zagrosensis sp. nov., isolated from soil. International Journal of Systematic and Evolutionary Microbiology 2014, 64(10), 3434-3440.
  • Mohammadipanah F, Hamedi J, Spröer C, Rohde M, Montero-Calasanz MaC, Klenk HP. Streptomyces zagrosensis sp. nov., isolated from soil. International Journal of Systematic and Evolutionary Microbiology 2014, 64(10), 3434-3410.
  • Gao XY, Zhi XY, Li HW, Klenk HP, Li WJ. Comparative Genomics of the Bacterial Genus Streptococcus Illuminates Evolutionary Implications of Species Groups. PLoS One 2014, 9(6), e101229.
  • Meier-Kolthoff JP, Hahnke RL, Petersen J, Scheuner C, Michael V, Fiebig A, Rohde C, Rohde M, Fartmann B, Goodwin LA, Chertkov O, Reddy TBK, Pati A, Ivanova NN, Markowitz V, Kyrpides NC, Woyke T, Goker M, Klenk H-P. Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy. Standards in Genomic Sciences 2014, 9, 2.
  • Frank O, Pradella S, Rohde M, Scheuner C, Klenk HP, Göker M, Petersen J. Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210T (= DSM 26640T= BS107T). Standards in Genomic Sciences 2014, 9(3), 914-932.
  • Riedel T, Fiebig A, Göker M, Klenk HP. Complete genome sequence of the bacteriochlorophyll a-containing Roseibacterium elongatum type strain (DSM 19469T), a representative of the Roseobacter group isolated from Australian coast sand. Standards in Genomic Sciences 2014, 9(3), 840-854.
  • Scheuner C, Tindall BJ, Lu M, Nolan M, Lapidus A, Cheng J-F, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, Mavromatis K, Ivanova N, Pati A, Chen A, Palaniappan K, Jeffries CD, Hauser L, Land M, Mwirichia R, Rohde M, Abt B, Detter JC, Woyke T, Eisen JA, Markowitz V, Hugenholtz P, Göker M, Kyrpides NC, Klenk H-P. Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae. Standards in Genomic Sciences 2014, 9, 10.
  • Montero-Calasanz MD, Goker M, Rohde M, Sproer C, Schumann P, Mayilraj S, Goodfellow M, Klenk HP. Description of Geodermatophilus amargosae sp nov., to Accommodate the Not Validly Named Geodermatophilus obscurus subsp. amargosae (Luedemann, 1968). Current Microbiology 2014, 68(3), 365-371.
  • Meier-Kolthoff JP, Auch JF, Klenk HP, Göker M. GBDP on the grid: a genome-based approach for species delimitation adjusted for an automated and highly parallel processing of large data sets. In: Schulz, Janne Christian; Hermann, Sven, ed. Hochleistungsrechnen in Baden-Wuerttemberg-Ausgewaehlte Aktivitaeten im bwGRiD 2012: Beitraege zu Anwenderprojekten und Infrastruktur im bwGRiD im Jahr 2012. KIT Scientific Publishing, 2014, pp.83-102.
  • Visser M, Parshina SN, Alves JI, Sousa DZ, Pereira IAC, Muyzer G, Kuever J, Lebedinsky AV, Koehorst JJ, Worm P, Plugge CM, Schaap PJ, Goodwin LA, Lapidus A, Kyrpides NC, Detter JC, Woyke T, Chain P, Davenport KW, Spring S, Rohde M, Klenk HP, Stams AJM. Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans. Standards in Genomic Sciences 2014, 9(3), 655-675.
  • Visser M, Parshina SN, Alves JI, Sousa DZ, Pereira IAC, Muyzer G, Kuever J, Lebedinsky AV, Koehorst JJ, Worm P, Plugge CM, Schaap PJ, Goodwin LA, Lapidus A, Kyrpides NC, Detter JC, Woyke T, Chain P, Davenport KW, Spring S, Rohde M, Klenk HP, Stams AJM. Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum carboxydivorans as a later synonym of Desulfotomaculum nigrificans. Standards in Genomic Sciences 2014, 9(3), 655-675.
  • Kuever J, Visser M, Loeffler C, Boll M, Worm P, Sousa DZ, Plugge CM, Schaap PJ, Muyzer G, Pereira IAC, Parshina SN, Goodwin LA, Kyrpides NC, Detter J, Woyke T, Chain P, Davenport KW, Rohde M, Spring S, Klenk HP, Stams AJM. Genome analysis of Desulfotomaculum gibsoniae strain GrollT a highly versatile Gram-positive sulfate-reducing bacterium. Standards in Genomic Sciences 2014, 9(3), 821-839.
  • Breider S, Teshima H, Petersen J, Chertkov O, Dalingault H, Chen A, Pati A, Ivanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Rohde M, Tindall BJ, Kyrpides NC, Woyke T, Simon M, Göker M, Klenk HP, Brinkhoff T. Genome sequence and emended description of Leisingera nanhaiensis strain DSM 23252T isolated from marine sediment. Standards in Genomic Sciences 2014, 9(3), 687-703.
  • Breider S, Teshima H, Petersen J, Chertkov O, Dalingault H, Chen A, Pati A, Ivanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Rohde M, Tindall BJ, Kyrpides NC, Woyke T, Simon M, Göker M, Klenk HP, Brinkhoff T. Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment. Standards in Genomic Sciences 2014, 9(3), 687-703.
  • Spring S, Fiebig A, Riedel T, Göker M, Klenk HP. Genome Sequence of Gammaproteobacterial Pseudohaliea rubra Type Strain DSM 19751, Isolated from Coastal Seawater of the Mediterranean Sea. Genome Announcements 2014, 2(6), e01208-14.
  • Goker M, Spring S, Scheuner C, Anderson I, Zeytun A, Nolan M, Lucas S, Tice H, Rio TGD, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring. Standards in Genomic Sciences 2014, 9(3), 1105-1117.
  • Riedel T, Fiebig A, Han J, Huntemann M, Spring S, Petersen J, Ivanova NN, Markowitz V, Woyke T, Göker M, Kyrpides NC, Klenk HP. Genome sequence of the Wenxinia marina type strain (DSM 24838T), a representative of the Roseobacter group isolated from oilfield sediments. Standards in Genomic Sciences 2014, 9(3), 855-865.
  • Riedel T, Spring S, Fiebig A, Petersen J, Kyrpides NC, Göker M, Klenk HP. Genome sequence of the exopolysaccharide-producing Salipiger mucosus type strain (A3 T), a moderately halophilic member of the Roseobacter clade. Standards in Genomic Sciences 2014, 9(3), 1331-1343.
  • Riedel T, Spring S, Fiebig A, Petersen J, Kypides NC, Göker M, Klenk HP. Genome sequence of the exopolysaccharide-producing Salipiger mucosus type strain (DSM 16094T), a moderately halophilic member of the Roseobacter clade. Standards in Genomic Sciences 2014, 9(3), 1331-1343.
  • Spring S, Fiebig A, Riedel T, Göker M, Klenk HP. Genome sequence of the Gammaproteobacterial Pseudohaliea rubra Type Strain DSM 19751, Isolated from Coastal Seawater of the Mediterranean Sea. Genome Announcements 2014, 2(6), e01208-e01214.
  • Göker M, Lu M, Fiebig A, Nolan M, Lapidus A, Tice H, Rio TGD, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Mayilraj S, Rohde M, Detter JC, Bunk B, Spring S, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. Standards in Genomic Sciences 2014, 9(3), 1076-1088.
  • Riedel T, Spring S, Fiebig A, Petersen J, Goeker M, Klenk HP. Genome sequence of the pink to light reddish-pigmented Rubellimicrobium mesophilum type strain (DSM 19309T), a representative of the Roseobacter group isolated from soil, and emended description of the species. Standards in Genomic Sciences 2014, 9(3), 902-913.
  • Göker M, Spring S, Scheuner C, Anderson I, Zeytun A, Nolan M, Lucas S, Tice H, GlavinaDelRio T, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang Yj, Jeffries CD, Rohde M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring. Standards in Genomic Sciences 2014, 9(3), 1105-1117.
  • Breider S, Scheuner C, Schumann P, Fiebig A, Petersen J, Pradella S, Klenk H-P, Brinkhoff T, Göker M. Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov. Frontiers in Microbiology 2014, 5, 416.
  • Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Goker M, Parker CT, Amann R, Beck BJ, Chain PSG, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, Detter JC, DeVos P, Donohue TJ, Dong XZ, Ehrlich DS, Fraser C, Gibbs R, Gilbert J, Gilna P, Glockner FO, Jansson JK, Keasling JD, Knight R, Labeda D, Lapidus A, Lee JS, Li WJ, MA J, Markowitz V, Moore ERB, Morrison M, Meyer F, Nelson KE, Ohkuma M, Ouzounis CA, Pace N, Parkhill J, Qin N, Rossello-Mora R, Sikorski J, Smith D, Sogin M, Stevens R, Stingl U, Suzuki K, Taylor D, Tiedje JM, Tindall B, Wagner M, Weinstock G, Weissenbach J, White O, Wang J, Zhang L, Zhou YG, Field D, Whitman WB, Garrity GM, Klenk HP. Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains. PLoS Biology 2014, 12(8), e1001920.
  • Kyrpides NC, Woyke T, Eisen JA, Garrity G, Lilburn TG, Beck BJ, Whitman WB, Hugenholtz P, Klenk H-P. Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project. Standards in Genomic Sciences 2014, 9(3), 1278-1284.
  • Field D, Sterk P, Kottmann R, WimDeSmet J, AmaralZettler L, Cochrane G, Cole JR, Davies N, Dawyndt P, Garrity GM, Gilbert JA, Glöckner FO, Hirschman L, Klenk HP, Knight R, Kyrpides N, Meyer F, KarschMizrachi I, Morrison N, Robbins R, Gil IS, Sansone S, Schriml L, Tatusova T, Ussery D, Yilmaz P, White O, Wooley J, Caporaso G. Genomic Standards Consortium Projects. Standards in Genomic Sciences 2014, 9(3), 599-601.
  • Ntougias S, Lapidus A, Han J, Mavromatis K, Pati A, Chen A, Klenk HP, Woyke T, Fasseas C, Kyrpides NC, Zervakis G. High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6(T)), a diphenol degrader with genes involved in the catechol pathway. Standards in Genomic Sciences 2014, 9(3), 783-793.
  • Zhou Y, Li R, Gao XY, Lapidus A, Han J, Haynes M, Lobos E, Huntemann M, Pati A, Ivanova NN, Rhode M, Mavromatis K, Tindall BJ, Markowitz V, Wojke T, Klenk HP, Kyrpides NC, LI WJ. High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China. Standards in Genomic Sciences 2014, 9(3), 1020-1030.
  • Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Highly parallelized inference of large genome-based phylogenies. Concurrency and Computation Practice and Experience 2014, 26(10), 1715-1729.
  • Piao H, Froula J, Du C, Kim TW, Hawley ER, Bauer S, Wang Z, Ivanova N, Clark DS, Klenk HP, Hess M. Identification of novel biomass-degrading enzymes from genomic dark matter: Poplulating genomic sequence space with functional annotation. Biotechnology and Bioengineering 2014, 111(8), 1550-1565.
  • Drüppel K, Hensler M, Trautwein K, Kossmehl S, Wöhlbrand L, Schmidt-Hohagen K, Ulbrich M, Bergen N, Meier-Kolthoff JP, Göker M, Klenk H-P, Schomburg D, Rabus R. Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade). Environmental Microbiology 2014, 16(1), 218-238.
  • Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Spröer C, Klenk HP, Sabaou N. Saccharopolyspora ghardaiensis H53, sp. nov., an extremely halophilic actinomycete isolated from Algerian Saharan soil. Journal of Antibiotics 2014, 67, 299-303.
  • Meier-Kolthoff JP, Klenk H-P, Göker M. Taxonomic use of DNA G+C content and DNA–DNA hybridization in the genomic age. International Journal of Systematic and Evolutionary Microbiology 2014, 64(Pt 2), 352-356.
  • Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Spröer C, Klenk HP, Sabaou N. Actinopolyspora mzabensis sp. nov., a halophilic actinomycete isolated from Algerian Saharan soil. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 3787-3792.
  • Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Spröer C, Klenk HP, Sabaou N. Actinopolyspora righensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil in Algeria. Antonie Van Leeuwenhoek 2013, 104(3), 301-307.
  • Meklat L, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Spröer C, Klenk HP, Sabaou N. Actinopolyspora saharensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria. Antonie Van Leeuwenhoek 2013, 103(4), 771-776.
  • Camas M, Sahin N, Sazak A, Spröer C, Klenk HP. Amycolatopsis magusensis sp. nov., isolated from soil. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 1254-1260.
  • Zhu WY, Zhang JL, Qin YL, Xiong ZJ, Zhang DF, Klenk HP, Zhao LX, Xu LH, Li WJ. Blastococcus endophyticus sp. nov., a novel actinobacterium isolated from Camptotheca acuminata. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 3269-3273.
  • Montero-Calasanz MaC, Göker M, Rohde M, Spröer C, Schumann P, Busse HJ, Schmid M, Tindall BJ, Klenk HP, Camacho M. Chryseobacterium hispalense sp. nov., a plant-growth promoting bacterium from a rainwater pond in an olive plant nursery and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 4386-4395.
  • Krishnamurthi S, Spring S, Kumar A, Mayilraj S, Klenk HP, Suresh K. Desulfotomaculum defluvii sp. nov., a sulfate-reducing bacterium isolated from the subsurface environment of a landfill. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 2290-2295.
  • Montero-Calasanz MaC, Göker M, Pötter G, Rohde M, Spröer C, Schumann P, Gorbushina AA, Klenk HP. Geodermatophilus africanus sp. nov., an halotolerant actinomycete isolated from Saharan desert sand. Antonie Van Leeuwenhoek 2013, 104(2), 207-216.
  • Montero-Calasanz MaC, Göker M, Pötter G, Rohde M, Spröer C, Schumann P, Gorbushina AA, Klenk HP. Geodermatophilus normandii sp. nov., isolated from Saharan desert sand. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 3437-3443.
  • Montero-Calasanz MaC, Göker M, Rohde M, Schumann P, Pötter G, Spröer C, Gorbushina AA, Klenk HP. Geodermatophilus siccatus sp. nov. isolated from arid sand of the Saharan desert in Chad. Antonie Van Leeuwenhoek 2013, 103(3), 449-456.
  • Montero-Calasanz MaC, Göker M, Pötter G, Rohde M, Spröer C, Schumann P, Klenk HP, Gorbushina AA. Geodermatophilus telluris sp. nov., an actionmycete isolated from Saharan desert sand. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 2254-2259.
  • Stielow B, Hensel G, Strobelt D, Makonde HM, Rhode M, Dijksterhuis J, Klenk H-P, Göker M. Hoffmannoscypha, a novel genus of brightly coloured, cupulate Pyronomataceae closely related to Tricharina and Geopora. Mycol Progress 2013, 12(4), 675-686.
  • Mohammadipanah F, Hamedi J, Göker M, Fiebig A, Pukall R, Spröer C, Klenk HP. Kribbella shirazensis sp. nov., isolated from Iranian soil. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 3369-3374.
  • Cheng JC, Chen W, Huo-Zhang B, Nimaichand S, Zhou EM, Lu XH, Klenk HP, Li WJ. Microlunatus cavernae sp. nov. a novel actinobacterium isloated from Alu ancient cave, Yunnan, south-west China. Antonie Van Leeuwenhoek 2013, 104(1), 95-101.
  • Camas M, Sazak A, Spröer C, Klenk HP, Cetin D, Guven K, Sahin N. Nonomuraea jabiensis sp. nov., isolated from arid soil. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 212-218.
  • Boubetra D, Zitouni A, Bouras N, Mathieu F, Lebrihi A, Schumann P, Spröer C, Klenk HP, Sabaou N. Saccharothrix hoggarensis sp. nov., a novel actinomycete isolated from Saharan soil. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 549-553.
  • Boubetra D, Zitouni A, Bouras N, Mathieu F, Lebrihi A, Schumann P, Spröer C, Klenk HP, Sabaou N. Saccharothrix saharensis sp. nov., a novel actinomycete isolated from Algerian Saharan soil. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 3744-3749.
  • Chen H, Jogler M, Rohde M, Klenk HP, Busse HJ, Tindall BJ, Spröer C, Overmann J. Sphingobium limneticum sp. nov., and Sphingobium boeckii, two novel freshwater planctonic members of the family Sphingomonadaceae, and reclassification of Sphingomonas suberifaciens as Sphingobium suberifaciens comb. nov. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 735-743.
  • Chen H, Jogler M, Rohde M, Klenk HP, Busse HJ, Tindall BJ, Spröer C, Overmann J. Sphingobium limneticum sp. nov., and Sphingobium boeckii, two novel freshwater planctonic members of the family Sphingomonadaceae, and reclassification of Sphingomonas suberifaciens as Sphingobium suberifaciens comb. nov. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 735-743.
  • Chen H, Jogler M, Tindall BJ, Klenk HP, Rohde M, Busse HJ, Overmann J. Sphingomonas starnbergensis sp. nov., isolated from a prealpine fresh water lake. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 1010-1023.
  • Makonde HM, Boga HI, Zipporah O, Mwirichia R, Mackenzie LM, Göker M, Klenk HP. 16S-rRNA-based analysis of bacterial diversity in the guts of fungus-cultivating termites (Microthermes and Odentothermes species). Antonie Van Leeuwenhoek 2013, 104(5), 869-883.
  • Vaas LAI, Sikorski J, Hofer B, Fiebig A, Buddruhs N, Klenk HP, Göker M. An R package for analyzing OmniLog phenotype microarray data. Bioinformatics 2013, 29(14), 1823-1824.
  • Li HW, Zhi XY, Zhou Y, Tang SK, Klenk HP, Zhao J, Li WJ. Comparative Genomics Analysis of the Genus Nocardiopsis Provides New Insights into Its Genetic Mechanisms of Environmental Adaptability. PLoS ONE 2013, 8(4), e61528.
  • Stackebrandt E, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniapan K, Chang YJ, Land L, Hauser L, Rohde M, Pukall R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Coriobacterium glomerans type strain (PW2T) from the midgut of Pyrrhocoris apterus L. (red soldier bug). Standards in Genomic Sciences 2013, 8(1), 15-25.
  • Khanna N, KumarShosh A, Huntemann M, Deshpande S, Han J, Chen A, Kyrpides NC, Mavrommatis K, Szeto E, Markowitz V, Ivanova N, Pagani I, Pati A, Pitluck S, Nolan M, Woyke T, Teshima H, Chertkov O, Dalingault H, Davenport K, Gu W, Munk C, Zhang X, Bruce D, Detter C, Xu Y, Quintana B, Reitanga K, Kunde Y, Green L, Erkkila T, Han C, Brambilla EM, Lang E, Klenk HP, Goodwin L, Chain P, Das D. Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production. Standards in Genomic Sciences 2013, 9(2), 359-369.
  • Mavromatis K, Stackebrandt E, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniapan K, Land L, Hauser L, Rohde M, Gronow S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437T). Standards in Genomic Sciences 2013, 8(1), 26-36.
  • Liolios K, Abt B, Scheuner C, Teshima H, Held B, Lapidus A, Nolan M, Lucas S, Deshpande S, Ceng JF, Tapia R, Goodwin LA, Pitluck S, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniapan K, Chang YJ, Land M, Hauser L, Rohde M, Tindall BJ, Detter JC, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Woyke T, Klenk HP, Kyrpides NC. Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift. Standards in Genomic Sciences 2013, 8(2), 165-176.
  • Biddruhs N, Chertkov O, Petersen J, Fiebig A, Chen A, Pati A, Ivanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Ivanova N, Lapidus A, Rohde M, Gronow S, Kyrpides NC, Woyke T, Göker M, Brinkhoff T, Klenk HP. Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336T), a representative of the Roseobacter clade. Standards in Genomic Sciences 2013, 9(1), 128-141.
  • Mavromatis K, Stackebrandt E, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniapan K, Land L, Rohde M, Spring S, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGAT). Standards in Genomic Sciences 2013, 8(1), 47-57.
  • Jogler M, Chen H, Simon J, Rohde M, Busse HJ, Klenk HP, Tindall BJ, Overmann J. Description of Sphingorhabdus planktonica gen. nov., sp. nov., and reclassification of three related Sphingopyxis species as members of the novel genus Sphingorhabdus gen. nov. International Journal of Systematic and Evolutionary Microbiology 2013, 63(4), 1342-1349.
  • Zhang DF, Pan HQ, He J, Zhang XM, Zhang YG, Klenk HP, Hu JC, Li WJ. Description of Streptomomospora sediminis sp. nov. and Streptomomospora nanhaiensis sp. nov. and reclassification of Nocardiopsis arabia (Hozzein & Goodfellow, 2008) as Streptomomospora arabica comb. nov. and emended description of the genus Streptomonospora. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 4447-4455.
  • Makonde HM, Boga HI, Osiema Z, Mwirichia R, Stielow BJ, Göker M, Klenk HP. Diversity of Termitomyces associated with fungus-farming termites assessed by culture-independent methods. PLoS ONE 2013, 8(2), e56464.
  • Busquets A, Peña A, Gomila M, Mulet M, Mayol J, García-Valdés E, Bennasar A, Huntemann M, Han J, Chen IM, Mavromatis K, Markowitz V, Palaniappan K, Ivanova N, Schaumberg A, Pati A, Reddy TBK, Nordberg H, Woyke T, Klenk HP, Kyrpides N, Lalucat J. Draft genome sequence of Pseudomonas azotifigens strain DSM 17556T (6H33bT), a nitrogen fixer strain isolated from a compost pile. Genome Announcements 2013, 1(6), e00893-13.
  • Visser M, Worm P, Muyzer G, Pereira IAC, Schaap P, Plugge CM, Kuever J, Parschina SN, Nazina TN, Ivanova AE, Bernier-Latmani R, Goodwin LA, Kyrpides NC, Woyke T, Chain P, Davenport KW, Spring S, Klenk HP, Stams AJM. Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a pysiological similarity with Pelotomaculum thermopropionicum strain SIT. Standards in Genomic Sciences 2013, 8(1), 69-87.
  • Fiebig A, Pradella S, Petersen J, Michael V, Päuker O, Rohde M, Göker M, Klenk HP, Wagner-Döbler I. Genome of the marine alphaproteobacterium Hoeflea phototrophica type strain (DFL-43T). Standards in Genomic Sciences 2013, 7(3), 440-448.
  • Fiebig A, Pradella S, Petersen J, Päuker O, Michael V, Lünsdorf H, Göker M, Klenk HP, Wagner-Döbler I. Genome of the R-body producing alphaproteopbacterium Labrenzia alexandrinii type strain (DFL-11T). Standards in Genomic Sciences 2013, 7(3), 413-426.
  • Anderson I, Teshima H, Nolan M, Lapidus A, Tice H, GlavinaDelRio T, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniapan K, Land M, Rohde M, Lang E, Detter JC, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl. Standards in Genomic Sciences 2013, 9(1), 83-92.
  • Beyersmann PG, Chertkov O, Petersen J, Fiebig A, Chen A, Pati A, Iavanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Rohde M, Gronow S, Kyrpides NC, Woyke T, Simon M, Göker M, Klenk HP. Genome sequence of Phaeobacter caeruleus type strain (DSM 24564T), a surface-associated member of the marine Roseobacter clade. Standards in Genomic Sciences 2013, 8(3), 403-419.
  • Dogs M, Teshima H, Petersen J, Fiebig A, Chertkov O, Dalingault H, Chen A, Pati A, Goodwin LA, Chain P, Detter JC, Ivanova N, Lapidus A, Rohde M, Gronow S, Kyrpides NC, Woyke T, Simon M, Göker M, Klenk HP, Brinkhoff T. Genome sequence of Phaeobacter daeponensis type strain (DSM 24529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis. Standards in Genomic Sciences 2013, 9(1), 142-159.
  • Dogs M, Voget S, Teshima H, Petersen J, Davenport K, Dalingault H, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Standfest S, Rohde M, Gronow S, Kyrpides NC, Woyke T, Simon M, Klenk HP, Göker M, Brinkhoff T. Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary-metabolite producing representative of the marine Roseobacter clade, and emendation of the species descripion of Phaeobacter inhibens. Standards in Genomic Sciences 2013, 9(2), 334-350.
  • Riedel T, Teshima H, Petrsen J, Fiebig A, Davenport K, Dalingault H, Erkkila T, Gu W, Munk C, Xu Y, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Rohde M, Gronow S, Kyrpides NC, Woyke T, Göker M, Brinkhoff T, Klenk HP. Genome sequence of the Leisingera aquimarina type strain (DSM 24565T), a member of the Roseobacter clade rich in extrachromosomal elements. Standards in Genomic Sciences 2013, 8(3), 389-402.
  • Riedel T, Fiebig A, Petersen J, Gronow S, Kyrpides NC, Göker M, Klenk HP. Genome sequence of the Litoreibacter arenae type strain (DSM 19593T), a member of the Roseobacter clade isolated from sea sand. Standards in Genomic Sciences 2013, 9(1), 117-127.
  • Meier-Kolthoff JP, Lu M, Huntemann M, Lucas S, Lapidus A, Copeland A, Pitluck S, Goodwin LA, Han C, Tapia R, Pötter G, Land M, Ivanova N, Rohde M, Göker M, Detter JC, Woyke T, Kyrpides NC, Klenk HP. Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134T). Standards in Genomic Sciences 2013, 9(1), 28-41.
  • Riedel T, Spring S, Fiebig A, Petersen J, Kyrpides NC, Göker M, Klenk HP. Genome sequence of the exosaccharide-producing Salipiger mucosus type strain (DSM 16094T), a moderately halophilic member of the roseobacter clade. Standards in Genomic Sciences 2013, 9(3), 1331-1343.
  • Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Chen A, Palaniapan K, Land M, Pan C, Rohde M, Gronow S, Detter JC, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Woyke T, Kyrpides NC, Klenk HP. Genome sequence of the free-living aerobic spirochaete Turneriella parva type strain (HT), and emendation of Turneriella parva. Standards in Genomic Sciences 2013, 8(2), 228-238.
  • Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, GlavinaDelRio T, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagami I, Ivanova N, Mikhailova N, Pati A, Chen A, Rohde M, Mayiraj S, Spring S, Detter JC, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701T) and emended description of the genus Thermanaerovibrio. Standards in Genomic Sciences 2013, 9(1), 57-70.
  • Huntermann M, Stackebrandt E, Held B, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniapan K, Land M, Rohde M, Gronow S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Woyke T, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Genome sequence of the phylogenetically isolated spirochaete Leptonema illini type strain (3055T). Standards in Genomic Sciences 2013, 8(2), 177-187.
  • Fiebig A, Riedel T, Petersen J, Klenk HP, Göker M. Genome sequence of the reddish-pigmented Rubellimicrobium thermophilum type strain (DSM 16684T), a member of the Roseobacter Clade. Standards in Genomic Sciences 2013, 8(3), 480-490.
  • Abt B, Göker M, Scheuner C, Han C, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniapan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Spring S, Gronow S, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Woyke T, Klenk HP. Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzera in the genus Treponema as Tremonema caldaria [caldarium] comb. nov., Treponema stenostrepta [stenostreptum] comb. nov., and Treponema zuelzera comb. nov., and emendation of the genus Treponema. Standards in Genomic Sciences 2013, 8(1), 88-105.
  • Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013, 14, 60.
  • Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Han C, Cheng JF, Tapia R, Goodwin LA, Bruce D, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniapan K, Rohde M, Tindall BJ, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (EN5T). Standards in Genomic Sciences 2013, 8(1), 37-46.
  • Ezeoke I, Klenk HP, Pötter G, Schumann P, Moser BD, Lasker BA, Nicholson A, Brown JM. Nocardia amikacinitolerans sp. nov. an amikacin-resistant human pathogen. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 1056-1061.
  • Neupane S, Goodwin LA, Högberg N, Kyrpides NC, Alström S, Bruce D, Quintana B, Munk C, Daligault H, Teshima H, Davenport K, Reitenga K, Green L, Chain P, Erkkila T, Gu W, Zhang X, Xu Y, Kunde Y, Ovchinnikova G, Chertkov O, Han C, Detter JC, Ivanova N, Pati A, Chen A, Szeto E, Mavrommatis K, Huntemann M, Nolan M, Pitluck S, Deshpande S, Markowitz V, Pagani I, Klenk HP, Woyke T, Finlay RD. Non-contiguous finished genome sequence of plant-growth stimulating Serratia proteamaculans S4. Standards in Genomic Sciences 2013, 8(3), 441-449.
  • Galardini M, Bazzicalupo M, Biondi E, Brambilla E, Brilli M, Bruce D, Chain P, Chen A, Dalingault H, Walston-Davenport K, Deshpande S, Detter JC, Goodwin LA, Han C, Han J, Huntemann M, Ivanova N, Klenk HP, Kyrpides NC, Markowitz V, Mavrommatis K, Mocali S, Nolan M, Pagani I, Pati A, Pini F, Pitluck S, Spini G, Szeto E, Teshima H, Wojke T, Mengoni A. Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58. Standards in Genomic Sciences 2013, 9(2), 325-333.
  • Göker M, Klenk HP. Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects. Standards in Genomic Sciences 2013, 8(2), 360-374.
  • Yarza P, Spröer C, Swiderski J, Mrotzek N, Spring S, Tindall BJ, Gronow S, Pukall R, Klenk HP, Lang E, Verbarg S, Crouch A, Lilburn T, Beck B, Unosson C, Cardew W, Moore ERB, Gomila M, Nakagawa Y, Yanssens D, DeVos P, Peiren J, Suttels T, Clermont D, Bizet C, Sakamoto M, Iida T, Kudo T, Kosako Y, Oshida Y, Ohkuma M, Arahal DR, Spieck E, Pommerening-Roeser A, Figge M, Park D, Buchanan P, Cifuentes A, Munoz R, Euzéby J, Schleifer KH, Ludwig W, Amann R, Glöckner FO, Rosselló-Móra R. Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names. Systematic and Applied Microbiology 2013, 36(1), 69-73.
  • Tortoli E, Gitti Z, Klenk HP, Lauria S, Mannino R, Mantegani P, Mariottini A, Neonakis I. Survey of 150 strains belonging to the Mycobacterium terrae complex and description of Mycobacterium engbaekii sp. nov., Mycobacterium heraklionense sp. nov. and Mycobacterium logobardum sp. nov. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 401-411.
  • Meier-Kolthoff JP, Göker M, Spröer C, Klenk HP. When should a DDH experiment be mandatory in microbial taxonomy?. Archives of Microbiology 2013, 195(6), 413-418.
  • Fang XM, Su J, Wang H, Wei YZ, Zhang T, Zhao LL, Liu HY, Ma BP, Klenk HP, Yu LY, Zhang YQ. Williamsia sterculiae sp. nov. isolated from a Chinese medicinal plant. International Journal of Systematic and Evolutionary Microbiology 2013, 63, 4158-4162.
  • Sazak A, Camas M, Spröer C, Klenk HP, Sahin N. Actinomadura geliboluensis sp. nov., isolated from soil. International Journal of Systematic and Evolutionary Microbiology 2012, 62, 2011-2017.
  • Xing K, Bian GK, Qin S, Klenk HP, Yuan B, Zhang YJ, Jiang JH. Kibdelosporangium phytohabitans sp. nov., a novel endophytic actinomycete isolated from oil-seed plant Jatropha curcas L. containing 1-aminocyclopropane-1-carboxylic acid deaminase. Antonie Van Leeuwenhoek 2012, 101(2), 433-441.
  • Kaur I, Das AP, Acharya M, Klenk HP, Sree A, Mayliraj S. Planococcus plakortidis sp. nov., isolated from the marine sponge Plaktoris simplex (Schulze). International Journal of Systematic and Evolutionary Microbiology 2012, 62, 883-889.
  • Qin S, Jiang JH, Klenk HP, Zhu WY, Xhao GZ, Zhao LX, Tang SK, Xu LH, Li WJ. Promicromonospora xylanilytica sp. nov., isolated from the surface-sterilized leaves of medical plant Maytenus austroyunnanensis. International Journal of Systematic and Evolutionary Microbiology 2012, 62, 84-89.
  • Yang LL, Ao T, Wang XH, He J, Klenk HP, Tang SK, Li WJ. Proposal of Intrasporangium mesophilum sp. nov., and reclassification of Humihabitans oryzae Kageyama et al. 2007 as Intrasporangium oryzae comb. nov. . Int J Syst Evol Microbiol 2012, 62, 1027-1041.
  • Stielow JB, Bratek Z, Klenk HP, Winter S, Menzel W. A novel mitovirus from the hypogeous ectomycorrhizal fungus Tuber excavatum. . Arch Virol 2012, 4, 787-790.
  • Meklat A, Sabaou N, Bouras N, Zitouni A, Spröer C, Klenk HP, Mathieu F, Lebrihi A. A novel strain of Actinopolyspora mortivallis with antibacterial activity isolated from a Saharan soil. Ann Microbiology 2012, 62, 1049-1057.
  • Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Spröer C, Klenk HP, Sabaou N. Actinopolyspora algeriensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil. Extremophiles 2012, 16, 771-776.
  • Stielow JB, Vaas LAI, Göker M, Hoffmann P, Klenk HP. Charcoal filter paper improves the viability of cryopreserved filamentous ectomycorrhizal and saprotrophic Basidomycota and Ascomycota. Mycologia 2012, 104, 324-330.
  • Anderson I, Tindall BJ, Rohde M, Lucas S, Han J, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Peters L, Pati A, Mikhaikova N, Pagani I, Teshima H, Han C, Tapia R, Land L, Woyke T, Klenk HP, Kyrpides NC, Ivanova N. Complete genome sequence of Halopiger xanaduensis type strain (SH-6T). Stand Genomic Sci 2012, 6, 31-42.
  • Meinecke L, Copeland A, Lapidus A, Lucas S, Berry KW, GlavinaDelRio T, Hammon N, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin L, Han C, Tapia R, Detter JC, Schmutz J, Brettin T, Larimer F, Land M, Hauser L, Kyrpides NC, Ivanova N, Göker M, Woyke T, Wu QL, Pocki M, Hahn MW, Klenk HP. Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1T). Stand Genomic Sci 2012, 6, 74-83.
  • Neupane S, Finlay RD, Alström S, Goodwin L, Kyrpides NC, Lucas S, Lapidus A, Bruce D, Pitluck S, Peters L, Ovchinnikova G, Chertkov O, Han C, Tapia R, Land M, Hauser L, Cheng JF, Ivanova N, Pagani I, Klenk HP, Woyke T, Högberg N. Complete genome sequence of the Serratia plymuthica strain AS12. Standards in Genomic Sciences 2012, 6(2), 165-173.
  • Copeland JB, Gu W, Yasawong M, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhaikova N, Pati A, Chen A, Palaniapan K, Land L, Pac C, Brambilla EM, Rohde M, Tindall BJ, Sikorski J, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1T) from a deep-sea hydrothermal vent chimney. Stand Genomic Sci 2012, 6, 21-30.
  • Copeland A, Zhang X, Misra M, Lapidus A, Nolan M, Lucase S, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, RLiolios K, Pagani I, Ivanova N, Mikhaikova N, Pati A, Chen A, Palaniapan K, Land L, Hauser L, Pan C, Jeffries CD, Detter CJ, Brambilla EM, Rohde M, Djao OD, Göker M, Sikorski J, Tindall BJ, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Mavromatis K. Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T). Stand Genomic Sci 2012, 6, 145-154.
  • Huntemann M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Despande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhaikova N, Pati A, Chen A, Palaniapan K, Land M, Hauser L, Pan C, Brambilla EM, Rohde M, Spring S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. Complete genome sequence of the facultatively anaerobic appendaged bacterium Muricauda restringensis type strain (B1T). Stand Genomic Sci 2012, 6, 185-193.
  • Kappler U, Davenport K, Beatson S, Lucas S, Lapidus A, Copeland A, Berry KW, GlavinaDelRio T, Hammon N, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin LA, Han C, Tapia R, Detter JC, Chang YJ, Jeffries CD, Land M, Hauser L, Kyrpides NC, Göker M, Ivanova N, Klenk HP, Woyke T. Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alphaproteo-bacterium Starkeya novella type strain (ATCC 8093T). Stand Genomic Sci 2012, 7, 44-58.
  • Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Despande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Pati A, Palaniappan K, Land M, Pan C, Rohde M, Pukall R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Mavromatis K. Complete genome sequence of the moderately thermophilic mineral-oxidizing firmicute Sulfobacillus acidophilus type strain (NALT). Stand Genomic Sci 2012, 6, 293-303.
  • Neupane S, Finlay RD, Kyrpides NC, Goodwin L, Alström S, Lucas S, Land M, Han J, Lapidus A, Cheng JF, Bruce D, Pitluck S, Peters L, Ovchinnikova G, Held B, Han C, Detter JC, Tapia R, Hauser L, Ivanova N, Pagani I, Woyke T, Klenk HP, Högberg N. Complete genome sequence of the plant-associated Serratia plymuthica strain AS13. Stand Genomic Sci 2012, 7, 22-30.
  • Spring S, Visser M, Lu M, Copeland A, Lapidus A, Lucas S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Ivanova N, Land M, Hauser L, Larimer F, Rohde M, Göker M, Detter JC, Kyrpides NC, Woyke T, Schaap PJ, Plugge CM, Muyzer G, Kuever J, Pereira IAC, Parshina SN, Bernier-Latmani R, Stams AJM, Klenk HP. Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT). Stand Genomic Sci 2012, 7, 304-309.
  • Abt B, Han C, Scheuner C, Lu M, Lapidus A, Nolan M, Lucas S, Hammon N, Despande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhaikova N, Huntemann M, Pati A, Chen A, Palaniapan K, Land L, Hauser L, Pan C, Brambilla EM, Rohde M, Spring S, Grownow S, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Detter JC. Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta. Stand Genomic Sc 2012, 6, 194-209.
  • Pester M, Brambilla EM, Alazard D, Rattei T, Weinmaier T, Han J, Lucas S, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Peters L, Ovrhinnikova G, Teshima H, Detter JC, Han CS, Tapia R, Land M, Hauser L, Kyrpides NC, Ivanova NN, Pagani I, Huntemann M, Wei Cl, Davenport K, Daligault H, Chain P, Chen A, Mavromatis K, Markowitz V, Szeto E, Mikhailova N, Pati A, Wagner M, Woyke T, Olivier B, Klenk HP, Spring S, Loy A. Complete genome sequences of Desulfosporosinus orientis DSM 765T, Desulfosporosinus youngiae DSM 17734T, Desulfosporosinus meridiei DSM 13257T, and Desulfosporosinus acidiphilus DSM 22740T. Journal of Bacteriology 2012, 194(22), 6300-6301.
  • Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, GlavinaDelRio T, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Brambilla EM, Rohde M, Tindall BJ, Detter JC, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T). . Stand Genomic Sci 2012, 7, 107-119.
  • Anderson I, Munk C, Lapidus A, Nolan M, Lucas S, Tice H, GlavinaDelRio T, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Tindall BJ, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Ivanova N. Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8T). Stand Genomic Sci 2012, 7, 210-220.
  • Anderson I, Held B, Lapidus A, Nolan M, Lucas S, Tice H, GlavinaDelRio T, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhaikova N, Pati A, Chen A, Palaniapan K, Land M, Brambilla EM, Rohde M, Spring S, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4T). Stand Genomic Sci 2012, 6, 174-184.
  • Göker M, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniapan K, Land M, Chang YJ, Jeffries CD, Brambilla EM, Rohde M, Spring S, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T). Stand Genomic Sci 2012, 6, 240-250.
  • Klenk HP, Lu M, Lucas S, Lapidus A, Copeland A, Pitluck S, Goodwin LA, Han C, Tapia R, Brambilla EM, Pötter G, Land M, Ivanova N, Rohde M, Göker M, Detter JC, Li WJ, Kyrpides NC, Woyke T. Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T). Stand Genomic Sci 2012, 6, 265-275.
  • Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, GlavinaDelRio T, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Rohde M, Tindall BJ, Detter JC, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Genome sequence of the orange-pigmented seawater bacterium Owenweeksia honkongensis type strain (UST20020801T). Stand Genomic Sci 2012, 7, 120-130.
  • Copeland A, Zeytun A, Yassawong M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Mavromatis K, Liolios K, Pagani I, Ivanova N, Mikhaikova N, Pati A, Chen A, Palaniapan K, Land M, Hauser L, Jeffries CD, Brambilla EM, Rohde M, Sikorski J, Pukall R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRPT). Stand Genomic Sci 2012, 6, 240-250.
  • Freese HM, Dalingault H, Petersen J, Pradella S, Davenport K, Teshima H, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Rohde M, Gronow S, Kyrpides NC, Woyke T, Brinkhoff T, Göker M, Overmann J, Klenk HP. Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain (DSM 23566T). Stand Genomic Sci 2012, 8, 450-464.
  • Klenk HP, Held B, Lucas S, Lapidus A, Copeland A, Hammon N, Pitluck S, Bruce D, Goodwin LA, Han C, Tapia R, Brambilla EM, Potter G, Land M, Ivanova N, Rohde M, Detter JC, Detter JC, Kyrpides NC, Woyke T. Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T). Stand Genomic Sci 2012, 6, 220-229.
  • Anderson I, Abt B, Lykidis A, Klenk HP, Kyrpides NC, Ivanova N. Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria. PLoS ONE 2012, 7(6), e39331.
  • Montero-Calasanz MaC, Goker M, Potter G, Rohde M, Sproer C, Schumann P, Gorbushina AA, Klenk HP. Geodermatophilus saharensis sp. nov., isolated from sand of the Saharan desert in Chad. Archives of Microbiology 2012, 194(3), 153-159.
  • Montero-Calasanz MaC, Göker M, Rohde M, Schumann P, Pötter G, Spröer C, Gorbushina AA, Klenk HP. Geodermatophilus siccatus sp. nov. isolated from arid sand of the Saharan desert in Chad. Antonie Van Leeuwenhoek 2012, 103, 449-456.
  • Montero-Calasanz MaC, Göker M, Pötter G, Rohde M, Spröer C, Schumann P, Gorbushina AA, Klenk HP. Montero-Calasanz MaC, Göker M, Pötter G, Rohde M, Spröer C, Schumann P, Gorbushina AA, Klenk HP (2012) Geodermatophilus arenarius sp. nov., a xerophilic actinomycete isolated from Saharan desert sand in Chad. Extremophiles 2012, 16, 903-909.
  • Mavromatis K, Chertkov O, Lapidus A, Nolan M, Lucas S, Tice H, GlavinaDelRio T, Cheng JF, Han C, Tapia R, Bruce D, Goodwin LA, Pitluck S, Huntemann M, Liolios K, Pagani I, Ivanova N, Mikhaikova N, Pati A, Chen A, Palaniapan K, Land M, Brambilla EM, Rohde M, Spring S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (HR1). Stand Genomic Sci 2012, 6, 210-219.
  • Mohammadipanah F, Matasyoh J, Hamedi J, Klenk HP, Laatsch H. Persipeptides A and B, two cyclic peptides from Streptomyces sp. UTMC 1154. Bioorg Medical Chem 2012, 20, 335-337.
  • Chen H, Joglier M, Rohde M, Klenk HP, Busse HJ, Tindall BJ, Spröer C, Overmann J. Reclassification and emended description of Caulobacter leidyi as Sphingomonas leidyi comb. nov., and emendation of the genus Sphingomonas. Int J Syst Evol Microbiol 2012, 62, 2851-2843.
  • Mavromatis K, Land M, Brettin TS, Quest DJ, Copeland A, Clum A, Goodwin L, Woyke T, Lapidus A, Klenk HP, Cottingham RW, Kyrpides NC. The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation. PLoS ONE 2012, 7(12), e48837.
  • Vaas LAI, Sikorski J, Michael V, Göker M, Klenk HP. Visualization and Curve-Parameter Estimation Strategies for Efficient Exploration of Phenotype Microarray Kinetics. PLoS ONE 2012, 7(4), e34846.
  • Tank Sk, Wang YX, Klenk HP, Shi R, Lou K, Zhang YJ, Chen C, Ruan JS, Li WJ. Actinopolyspora alba sp. nov. and Actinopolyspora erythraea sp. nov., isolated from a salt field, and reclassification of Actinopolyspora iraqiensis Ruan et al. 1994 as later heterotypic synonym of Saccharomonospora halophila.. Int J Syst Evol Microbiol 2011, 61, 1693-1698.
  • Dhanjal S, Kaur I, Korpole S, Schumann P, Cameotraa SS, Pukall R, Klenk HP, Mayiraj S. Agrococcus carbonis sp.nov. isolated from soil of a coal mine. Int J Syst Evol Microbiol 2011, 61, 1253-1258.
  • Chen YG, Zhang YQ, He JW, Klenk HP, Xiao JQ, Zhu HY, Tang SK, Li WJ. Bacillus hemicentroti sp. nov., a moderately halophile isolated from a sea urchin. Int J Syst Evol Microbiol 2011, 61, 2950-2955.
  • Chen YG, Zhang L, Zhang YQ, He JW, Klenk HP, Tang SK, Zhang YX, Li WJ. Bacillus nanhaiensis sp. nov., isolated from an oyster. Int J Syst Evol Microbiol 2011, 61, 888-893.
  • Chen YG, Zhang YQ, Chen QH, Klenk HP, He JW, Tang SK, Cui XL, Li WJ. Bacillus xiaoxiensis sp. nov., a slightly halophiolic bacterium isolated from non-saline forest soil. . Int J Syst Evol Microbiol 2011, 61, 2095-2100.
  • Ruckmani A, Kaur I, Schumann P, Klenk HP, Mayiraj S. Calidifontibacter indicus sp. nov., a member of the family Dermatococcaceae isolated from a hot spring, and emended description of the family Dermatococcaceae. Int J Syst Evol Microbiol 2011, 61, 2419-2424.
  • Mayilraj S, uckmani A, Kaur C, Kaur I, Klenk HP. Cohnella ferri sp. nov., a novel member of the genus Cohnella isolated from haematite ore. Curr Microbiol 2011, 62, 1704-1709.
  • vonJan M, Riegger N, Pötter G, Schumann P, Verbarg S, Spröer C, Rohde M, Lauer B, Labeda DP, Klenk HP. Kroppenstedtia eburnea gen nov., sp. nov. a thermoactinomycete isolated by environmental screening, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006 emend. Yassin et al. 2009. Int J Syst Evol Microbiol 2011, 61, 2304-2310.
  • Wang Y, Tang SK, Li Z, Lou K, Mao PH, Jin X, Klenk HP, Zhang LX, Li WJ. Myceligenerans halotolerans sp. nov. an actinomycete isolated from a salt lake, and emended description of the genus Mycelegenerans. Int J Syst Evol Microbiol 2011, 61, 974-978.
  • Tortoli E, Böttger EC, Fabio A, Falsen E, Gitti Z, Grottola A, Klenk HP, Mannino R, Mariottini A, Messino M, Pecarari M, Rumpianesi F. Mycobacterium europaeum sp.nov., a scotochromogenic species related to Mycobacterium simiae complex. International Journal of Systematic and Evolutionary Microbiology 2011, 61(7), 1606-1611.
  • Zhao GZ, Li J, Zhu WY, Klenk HP, Xu LH, Li WJ. Nocardia artemisiae sp. nov., an endophytic actinobacterium isolated from a surface-sterilized stem of Artemisia annua L. Int J Syst Evol Microbiol 2011, 61, 2933-2937.
  • Hamedi J, Mohammadipanah F, Pötter G, Spröer C, Schumann P, Göker M, Klenk HP. Nocardiopsis arvandica sp. nov., isolated from the sandy soil. Intl J System Evol Microbiol 2011, 61, 1189-1194.
  • Zhang YJ, Tang SK, Shi R, Klenk HP, Chen C, Yang LL, Zhou Y, Li WJ. Salinisphaera halophila sp. nov., a moderately halophilic bacterium isolated from brine of a salt well. International Journal of Systematic and Evolutionary Microbiology 2011, 62(9), 2174-2179.
  • Moser BD, Klenk HP, Schumann P, Pötter G, Lasker BA, Steigerwalt AG, Hinrikson HP, Brown JM. Nocardia niwae sp. nov., isolated from pulmonary source. International Journal of Systematic and Evolutionary Microbiology 2011, 61(2), 438-442.
  • Dhanjal S, Ruckmani A, Cameotra SS, Pukall R, Klenk HP, Mayiraj S. Yaniella fodinae sp. nov., isolated from coal mine. 61:535-539.. Int J Syst Evol Microbiol 2011, 61, 535-539.
  • Zhang CM, Huang XW, Pan WZ, Zhang J, Wei KB, Klenk HP, Tang SK, Li WJ, Zhang FQ. Anoxybacillus tengchongensis sp. nov. and Anoxybacillus eryuanensis sp. nov., facultatively anaerobic, alkalitolerant bacteria from hot springs. . Int J Syst Evol Microbiol 2011, 61, 118-122.
  • Yassin AF, Hufer H, Siering C, Klenk HP, Schumann P. Auritidibacter ignavus sp. nov., of the family Micrococcaceae isolated from an ear swab of a man with otitis externa, transfer of the family Yaniellaceae Li et al. 2008 to the family Micrococcaceae and emended description of the suborder Micrococcineae. . Int J Syst Evol Microbiol 2011, 61, 223-230.
  • Pitluck S, Sikorski J, Jeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brambilla E, Ngatchou-Djao OD, Rohde M, Rohde M, Spring S, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Land M. Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1T). . Stand Genomic Sci 2011, 4, 54-62.
  • HAbt B, Lu M, Misra M, Han C, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios L, Pagani I, Ivanova N, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brambilla E, Rohde M, Göker M, Tindall BJ, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of Cellulophaga algicola type strain (IC166T). . Stand Genomic Sci 2011, 4, 72-80.
  • Pagani I, Lapidus A, Nolan M, Lucas S, hammon C, Deshpande S, Cheng JF, Chertkov O, Davenport K, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Mavromatis K, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brambilla R, Kannan KP, Ngatchou-Djao OD, Rohde M, Pukall R, Spring S, Göker M, Sikorski J, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Desulfobulbus propionicus strain (1pr3T). . Stand Genomic Sci 2011, 4, 100-110.
  • Göker M, Cleland D, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Panani I, Ivanova N, Mavromatis K, Pati A, Chen A, Palaniappan K, Hauser L, Chang YJ, Jeffries CD, Detter JC, Beck B, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Isosphaera pallida type strain (IS1BT). . Stand Genomic Sci 2011, 4, 63-71.
  • Abt B, Teshima H, Lucas S, Lapidus A, GlavinaDelRio T, Nolan M, Hope T, Chang JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Pati A, Tapia R, Han C, Goodwin L, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Göker M, Tindall BJ, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Kyrpides NC. Complete genome sequence of Leadbetterella byssophila type strain (4M15T). 4:2-12.. Stand Genomic Sci 2011, 4, 2-12.
  • Gronow S, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Paludibacter propionicigenes type strain (WB4T). . Stand Genomic Sci 2011, 4, 36-44.
  • Chertkov O, Sikorski J, Nolan M, Lapidus A, Lucas S, Kiss H, GlavinaDelRio T, Tice H, Han C, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Ngatchou-Djao OD, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Han C, Detter JC, Rohde M, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Thermomonospora curvata type strain (B9T). . Stand Genomic Sci 2011, 4, 13-22.
  • Ivanova N, Rohde C, Munk C, Nolan M, Lucas S, GlavinaDelRio T, Tice H, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios L, Mavromatis L, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brambilla E, Rohde M, Göker M, Tindall BJ, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of Truepera radiovictrix type strain (RQ-24T). . Stand Genomic Sci 2011, 4, 91-99.
  • Lang E, Teshima H, Lucas S, Lapidus A, Hammon N, Deshpande S, Nolan M, Cheng JF, Pitluck S, Liolios K, Pagani I, Mikhaikova N, Ivanova N, Mavromatis K, Pati A, Tapia R, Han C, Goodwin L, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brambilla EM, Kopitz M, Rohde M, Göker M, Tindall BJ, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Weeksella virosa strain (9751T).. Stand Genomic Sci 2011, 4, 81-90.
  • Stielow B, Klenk HP, Menzel W. Complete genome sequence of the first endornavirus from the ascocarp of the ectomycorrhizal fungus Tuber aestivum Vittad. 156. Arch Virol 2011, 343-345.
  • Stielow B, Bratek Z, Orczán AKI, Rudnoy Z, Hensel G, Hoffmann P, Klenk HP, Göker M. Species Delimitation in Taxonomically Difficult Fungi: The Case of Hymenogaster. PLoS ONE 2011, 6(1), e15614.
  • Schwibbert K, Marin-Sanguino A, Bagyan I, Heidrich G, Lentzen G, Seitz H, Rampp M, Schuster SC, Klenk HP, Pfeiffer F, Oesterhelt D, Kunte HJ. A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581T. Envir Microbiol 2011, 13, 1973-1994.
  • Stielow JB, Klenk HP, Winter S, Menzel W. A novel Tuber aestivum (Vittad.) mitovirus. Arch Virol 2011, 156, 1107-1110.
  • Göker M, Scheuner C, Klenk HP, Stielow JB, Menzel W. Codivergence of Mycoviruses with Their Hosts. PLoS ONE 2011, 6(7), e22252.
  • Pati A, Gronow S, Zeytun A, Lapidus A, Nolan M, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brambilla E, Rohde M, Rohde M, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lucas S. Complete genome sequence of Bacteroides helcogenes type strain (P 36-108T) . Standards in Genomic Sciences 2011, 4(1), 45-53.
  • Gronow S, Held B, Lucas S, Lapidus A, GlavinaDelRio T, Nolan M, Tice H, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Pati A, Tapia R, Han C, Goodwin L, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brambilla EM, Rohde M, Göker M, Detter JC, Woyke T, Bristow J, Markowitz V, Hugenholtz P, Kyrpides NC, Kyrpides NC, Klenk HP. Complete genome sequence of Bacteroides salanitronis type strain (BL78T). Stand Genomic Sci 2011, 4, 191-199.
  • Pati A, Apt B, Teshima H, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapida R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Markowitz K, Ovchinikova G, Chen A, Palaniappan K, Land M, Hauser L, Jeffries CD, Detter JC, Brambilla EM, Kannan KP, Rohde M, Spring S, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Ivanova N. Complete genome sequence of Cellulophaga lytica type strain (LIM-21T). Standards in Genomic Sciences 2011, 4(2), 221-232.
  • Pukall R, Zeytun A, Lucas S, Lapidus A, Hammon N, Deshpande S, Nolan M, Cheng JF, Pitluck S, Liolios K, Pagani I, Mikhailova N, Ivanova N, Mavromatis K, Pati A, Tapia R, Han C, Goodwin L, Chen A, Palaniappan K, Land M, Hauser L, Chang YK, Jeffries CD, Brambilla E, Rohde M, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Deinococcus maricopensis type strain (LB-34T). Standards in Genomic Sciences 2011, 4(2), 163-172.
  • Wirth R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Bilek Y, Hader M, Rohde M, Spring S, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Desulfurococcus mucosus type strain (07/1T). Stand Genomic Sci 2011, 4, 173-182.
  • Daligault H, Lapidus A, Zyetun A, Nolan M, Lucas S, GlavinaDelRio T, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntermann M, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Verbarg S, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. Complete genome sequence of Haliscomenobacter hydrossis type strain (OT). Stand Genomic Sci 2011, 4, 352-360.
  • Chertkov O, Brown PJB, Keysella DT, DePedro MA, Lucas S, Copeland A, Lapidus A, GlavinaDelRio T, Tice H, Bruce D, Goodwin L, Pitluck S, Detter JC, Han C, Larimer F, Chang YJ, Jeffries CD, Land M, Hauser L, Kyrpides NC, Ivanova N, Ovchinnikova G, Tindall BJ, Göker M, Klenk HP, Brun YV. Complete genome sequence of Hirschia baltica type strain (IFAM 1418T). Stand Genomic Sci 2011, 5, 287-297.
  • Zeytun A, Sikoski J, Nolan M, Lapidus A, Lucas S, Han J, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Ngatchou-Djao OD, Land M, Hauser L, Jeffries CD, Han C, Detter JC, Übler S, Rohde M, Göker M, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6T). Stand Genomic Sci 2011, 4, 131-143.
  • Pagani I, Chertkov O, Lapidus A, Lucas S, GlavinaDelRio T, Tice H, Copeland A, Cheng JF, Nolan M, Saunders E, Pitluck S, Held B, Goodwin L, Liolios K, Ovchinnikova G, Ivanova N, Mavromatis L, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Jeffries CD, Detter JC, Han C, Tapia R, Ngatchau-Djao OD, Rohde M, Göker M, Spring S, Sikorski J, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Marivirga tractuosa type strain (H-43T). Stand Genomic Sci 2011, 4, 154-162.
  • Anderson I, Sikorski J, Zeyfun A, Nolan M, Lapidus A, Lucas S, Hammon N, Despande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntermann M, Mavromatis K, Ovchinikova G, Pai A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Ngatchau-Djao OD, Rohde M, Tindall BJ, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Nitratifractor salsuginis type strain (E9137-1T). Stand Genomic Sci 2011, 4, 322-330.
  • Pati A, Zhang X, Lapidus A, Nolan M, Lucas S, GlavinaDelRio R, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Hauser L, Jeffries CD, Brambilla EM, Röhl A, Mwirichia R, Rohde M, Tindall BJ, Sikorski J, Wirth R, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Land M. Complete genome sequence of Oceanithermus profundus type strain (506T). Stand Genomic Sc 2011, 4, 210-220.
  • Göker M, Gronow S, Zeytun A, Nolan M, Lucas S, Lapidus A, Hammon N, Despande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Ovchinikova G, Pati A, Tapia R, Han C, Goodwin L, Chen A, Palaniappan K, Land M, Hauser L, Jeffries CD, Brambilla EM, Rohde M, Detter JC, Woyke T, Bristow J, Markowitz V, Hugenholtz P, Eisen JA, Kyrpides NC, Klenk HP. Complete genome sequence of Odoribacter splanchnicus type strain (1651/6T). Stand Genomic Sci 2011, 4, 200-209.
  • Munk AC, Copeland A, Lucas S, Lapidus A, GlavinaDelRio T, Barry K, Detter JC, Hammon N, Israni S, Pitluck S, Brettin T, Bruce D, Han C, Tapia R, Gina P, Schmutz J, Larimer F, Land M, Kyrpides NC, Mavromatis K, Richardson P, Rohde M, Göker M, Klenk HP, Zhang Y, Roberts GP, Reslewic S, Schwartz DC. Complete genome sequence of Rhodospirillum rubrum type strain (S1T). Stand Genomic Sci 2011, 4, 293-302.
  • Mavromatis K, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Jeffries CD, Han C, Detter JC, Brambilla EM, Rohde M, Göker M, Gronow S, Wojke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845T). Stand Genomic Sci 2011, 4, 1434-153.
  • Anderson I, Wirth R, Lucas S, Copeland A, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Davenport K, Detter JC, Han C, Tapia R, Land M, Hauser L, Pati A, Mikhailova N, Ivanova N, Woyke T, Klenk HP, Kyrpides NC. Complete genome sequence of Staphylothelmus hellenicus P8T. Stand Genomic Sci 2011, 5, 12-20.
  • Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, Mavromatis K, Ovchinikova K, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Spring S, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, ugenholtz P, Kyrpides NC, Klenk HP, Detter JC. Complete genome sequence of Syntrophobotulus glycolicus (FlGlyRT). Standards in Genomic Sciences 2011, 4(3), 371-380.
  • Han C, Gronow S, Teshima H, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Zeytun A, Tapia R, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Brambilla EM, Rohde M, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Treponema succinifaciens type strain (6091T). Stand Genomic Sci 2011, 4, 361-370.
  • Munk AC, Lapidus A, Lucas S, Nolan M, Tice H, Cheng JF, GlavinaDelRio T, Goodwin L, Pitluck S, Liolios K, Huntermann M, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Tapia R, Han C, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Yasawong M, Brambilla EM, Rohde M, Sikorski J, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Tsukamurella paurometabola type strain (no. 33T). Standards in Genomic Sciences 2011, 4(3), 342-351.
  • Göker M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios L, Ivanova N, Pagani I, Mavromatis K, Ovchinikova K, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Spring S, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2T). Stand Genomic Sci 2011, 4, 393-401.
  • Ivanova N, Sikorski J, Chertkov O, Nolan M, Lucas S, Hammon N, Despande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntermann M, Liolios K, Pangani I, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palianiappan K, Land M, Hauser L, Brambilla EM, Kannan KP, Rohde M, Tindall BJ, Göker M, Detter JC, Wojke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of the extremely halophilic Halanaerobium prevalens type strain (GLST). Stand Genomic Sci 2011, 4, 312-321.
  • Kiss H, Nett M, Domin N, Martin K, Maresca JA, Copeland A, Lapidus A, Lucas S, Berry KW, GlavinaDelRio T, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin L, Han C, Detter JC, Schmultz J, Brettin T, Land M, Hauser L, Kyrpides NC, Ivanova N, Göker M, Woyke T, Klenk HP, Bryant DA. Complete genome sequence of the filamentous predatory bacterium Herpetosiphon aurantiacus type strain (114-95T). Stand Genomic Sci 2011, 5, 356-370.
  • Woyke T, Chertkov O, Lapidus A, Nolan M, Lucas S, GlavinaDelRio T, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios L, Pagani I, Ivanova N, Huntemann M, Mavromatis K, ikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Mwirichia R, Sikorski J, Tindall BJ, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262T). Stand Genomic Sci 2011, 5, 21-29.
  • Liolios K, Sikorski J, Lu M, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Ivanova N, Pagani I, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Kotsyurbenko O, Rohde M, Tindall BJ, Abt B, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113T). Stand Genomic 2011, 5, 30-40.
  • Anderson I, Göker M, Nolan M, Lucas S, Hammon N, Despande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, Mavromatis K, Ovchinikova K, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Huber H, Yasawong M, Rohde M, Spring S, Abt B, Sikorski J, Wirth D, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of the hyperthermophilic chemotithoautotroph Pyrolobus fumarii type strain (1AT). Stand Genomic Sci 2011, 4, 381-392.
  • Lapidus A, Chertkov O, Nolan M, Lucas S, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios L, Pagani I, Ivanova N, Huntemann M, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Abt B, Spring S, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. Complete genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici type strain (MAS10T). Stand Genomic Sci 2011, 5, 86-96.
  • Göker M, LDaligault H, Mwirichia R, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniapan K, Han C, Land M, Hauser L, Pan C, Brambilla EM, Rohde M, Spring S, Sikorski J, Wirth R, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtlz P, Kyrpides NC, Klenk HP. Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophicum type strain (BSAT) from a deep-sea hydrothermal vent. Stand Genomic Sci 2011, 5, 407-415.
  • Huntlemann M, Lu M, Nolan M, Lapidus A, Lucas S, Hammo N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Jeffries CD, Detter JC, Brambilla EM, Rohde M, Spring S, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Mavromatis K. Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH2T). Stand Genomic Sci 2011, 4, 303-311.
  • Klenk HP, Lapidus A, Chertkov O, Copeland A, GlavinaDelRio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Bruce D, Goodwin L, Pitluck S, Pati A, Ivanova N, Mavromatis K, Daum C, Chen A, Palaniappan K, Chang YJ, Land M, Hauser L, Jeffries CD, Detter JC, Rohde M, Abt B, Pukall R, Tindall BJ, Göker M, Bristow J, Markowitz V, Hugenholtz P, Eisen JA. Complete genome sequence of the thermophilic, hydrogen-oxydizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Stand Genomic Sci 2011, 5, 121-134.
  • Lapidus A, Nolan M, Lucas S, GlavinaDelRio T, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios L, Pagani I, Ivanova N, Huntemann M, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniapan K, Han C, Land M, Brambilla EM, Rohde M, Abt B, Verbarg S, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtlz P, Kyrpides NC, Klenk HP, Woyke T. Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2T). Stand Genomic Sci 2011, 5, 398-406.
  • Vahed SZ, Forouhandeh H, Hassanzadeh S, Klenk HP, Hejazi MA, Hejazi MS. Isolation and characterization of halophilic bacteria from Urmia lake in Iran. Microbiology 2011, 80, 826-833.
  • Chang YJ, Land M, Hauser L, Chertkov O, GlavinaDelRio T, Nolan M, Copeland A, Tice H, Cheng JF, Lucas S, Han C, Goodwin L, Pitluck S, Ivanova N, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Mavromatis K, Liolios K, Brettin T, Fiebig A, Rohde M, Abt B, Göker M, Detter JC, Wojke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter recemifer type strain (SOSP1-21T). Stand Genomic Sci 2011, 5, 97-111.
  • Land M, Held B, Grownow S, Abt B, Lucas S, GlavinaDelRio T, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhaikova N, Pati A, Tapia R, Han C, Goodwin L, Chen A, Palaniappan K, Hauser L, Jeffries CD, Brambilla EM, Rohde M, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139T). Stand Genomic Sci 2011, 4, 233-243.
  • Pati A, Gronow S, Lu M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Mavromatis K, Mikhailova N, Huntemann M, Chen A, Palaniappan K, Land M, Hauser L, Detter JC, Brambilla EM, Rohde M, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Ivanova N. Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharovorans type strain (PPPA20T). Stand Genomic Sci 2011, 5, 41-49.
  • Anderson I, Scheuner C, Göker M, Mavromatis K, Hooper SD, Porat I, Klenk HP, Ivanova N, Kyrpides NC. Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes. PLoS ONE 2011, 6(5), e120237.
  • Borriss R, Chen XH, Rückert C, Blom J, Becker A, Baumgarth B, Fan B, Pukall R, Schumann P, Spröer C, Junge H, Vater J, Pühler A, Klenk HP. Relationship of Bacillus amyloliquefaciens clades associated with strains DSM7T and FZB42: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens nov. and Bacillus amyloliquefaciens subsp. plantarum nov. based on their discriminating complete genome sequences. Int J Syst Evol Microbiol 2011, 61, 342-351.
  • Siebers B, Zaparty M, Raddatz G, Tjaden B, Albers SV, Bell SD, Blombach F, Kletzin A, Kyrpides N, Lanz C, Plagens A, Rampp M, Rosinus A, vonJan M, Makarova KS, Klenk HP, Schuster SC, Hensel R. The Complete Genome Sequence of Thermoproteus tenax: A Physiologically Versatile Member of the Crenarchaeota. PLoS ONE 2011, 6(10), e24222.
  • Gemeinholzer B, Dröge G, Zetzsche H, Haszprunar G, Klenk HP, Güntsch A, Berendsohn WG, Wägele JW. The DNA Bank Network: The Start from a German Initiative. Biopreservation and Biobanking 2011, 9(1), 51-55.
  • Field D, Amaral-Zettler L, Cochrane G, Cole J, Dawyndt P, Garrity GM, Gilbert J, Glöckner FO, Hirschman L, Karsch-Mizrachi I, Klenk HP, Knight R, Kottmann R, Kyrpides NC, Meyer F, San Gil I, Sansone SA, Schrimi LM, Sterk P, Tatusova T, Ussery DW, White O, Wooley J. The Genomic Standards Consortium. PLoS Biology 2011, 9(6), e1001088.
  • Yassin AF, Sproer C, Siering C, Klenk HP. Actinomadura sputi sp. nov. isolated from the sputum of a patient with pulmonary infection. Int J Syst Evol Microbiol 2010, 60, 149-153.
  • Hamedi J, Mohammadipanah F, Klenk HP, Pötter G, Schumann P, Spröer C, vonJan M, Kroppenstedt RM. Streptomyces iranensis sp.nov., isolated from soil. Int J Syst Evol Microbiol 2010, 60, 1505-1509.
  • Pati A, Gronow S, Lapidus A, Copeland A, GlavinaDelRio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Chertkov O, Bruce D, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Rohde M, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Arcobacter nitrofigilis type strain (CIT). . Stand Genomic Sci 2010, 2, 300-308.
  • Liolios K, Sikorski J, Jando M, Lapidus A, Copeland A, GlavinaDelRio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Woyke T, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Mikhailova N, Chertkov O, Kuske C, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brettin T, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Thermobispora bispora type strain (R51T). Stand Genomic Sci 2010, 2, 318-326.
  • Zhang J, Tang SK, Zhang YQ, Yu Ly, Klenk HP, Li W-J. Laceyella tenchongensis sp. nov. a thermophilie isolated from soil of a volcano. Int J Syst Evol Microbiol 2010, 60, 2226-2230.
  • Jannat-Khah D, Kroppenstedt RM, Klenk HP, Spröer C, Schumann P, Lasker BA, Steigerwalt AG, Hinrikson HP, Brown JM. Nocardia mikamii, sp. nov., isolated from pulmonary infections in the USA. Int J Syst Microbiol 2010, 60, 2272-2276.
  • Hamedi J, Mohammadipanah F, vonJan M, Pötter G, Schumann P, Spröer C, Klenk HP, Kroppenstedt RM. Nocardiopsis sinuspersici sp. nov., isolated from sandy rhizospheric soil. . Int J Syst Evol Microbiol 2010, 60, 2346-2352.
  • Qin S, Zhu WY, Jiang JH, Klenk HP, Li J, Zhao GZ, Xu LH, Li WJ. Pseudonocardia tropica sp. nov., an endophytic actinomycete isolated from the stem of Maytenus austroyunnanensis. Int J Syst Evol Microbiol 2010, 60, 2524-2528.
  • Qin S, Chen HH, Klenk HP, Kim CJ, Xu LH, Li WJ. Saccharopolyspora gloriosae sp. nov., a novel endophytic actinomycete isolated from the stem of Gloriosa superba L.. Int J Syst Evol Microbiol 2010, 60, 1147-1151. In Press.
  • Yssawong M, Teshima H, Lapidus A, Nolan M, Lucas S, GlavinaDelRio T, Tice H, Cheng JF, Bruce D, Detter C, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palianiappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Sikorski J, Pukall R, Göker M, Wojke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Arcanobacterium haemolyticum type strain (1118T). Stand Genomic Sci 2010, 3, 126-135.
  • Pati A, Sikorski J, Gronow S, Munk C, Lapidus A, Copeland A, GlavinaDelRio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Spring S, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Brachyspira murdochii type strain (56-150T). . Stand Genomic Sci 2010, 2, 260-269.
  • Kiss H, Lang E, Lapidus A, Copeland A, Nolan M, GlavinaDelRio T, Chen F, Lucas S, Tice H, Cheng JF, Han C, Goodwin L, Pitluck S, Liolios K, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brettin T, Spring S, Rohde M, Goker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk KP. Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460T). Stand Genomic Sci 2010, 2, 280-289.
  • Sun H, Spring S, Lapidus A, Davenport K, GlavinaDelRio T, Tice H, Nolan M, Copeland A, Cheng JF, Lucas S, Tapia R, Goodwin L, Pitluck S, Ivanova N, Pagani I, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Hauser L, Chang YJ, Jeffries CD, Detter JC, Han C, Rohde M, Brambillia E, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Land M. Complete genome sequence of Desulfarculus baarsii type strain (2st14T). . Stand Genomic 2010, 276-284.
  • Göker M, Held B, Lapidus A, Nolan M, Spring S, Yasawong M, Lucas S, GlavinaDelRio T, Tice H, Cheng JF, Goodwin L, Tapia R, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palianiappan K, Brambilla E, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Detter JC, Han C, Rohde M, Sikorski J, Wojke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1T). Stand Genomic Sci 2010, 3, 76-84.
  • Sikorski J, Chertkov O, Lapidus A, Nolan M, Lucas S, GlavinaDelRio T, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brambilla E, Yasawong M, Rohde M, Pukall R, Spring S, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Ilyobacter polytrophus type strain (CuHbu1T). . Stand Genomic Sci 2010, 3, 304-314.
  • GlavinaDelRio T, Chertkov O, Yasawong M, Lucas S, Deshpande S, Cheng JF, Detter C, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Pukall R, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of Intrasporangium calvum type strain (7 KIPT). . Stand Genomic Sci 2010, 3, 294-303.
  • Anderson I, Ngatchou-Djao OD, Misra M, Chertkov O, Nolan M, Lucas S, Lapidus A, Kiss H, Cleland D, Lapidus A, GlavinaDelRio T, Tice H, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Brambilla E, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Sikorski J, Spring S, Rohde M, Eichinger K, Huber H, Wirth R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Methanothermus fervidus type strain (V24ST). . Stand Genomic Sci 2010, 3, 315-324.
  • Mavromatis K, Yassawong M, Chertkov O, Lapidus A, Lucas S, Nolan M, GlavinaDelRio T, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Tapia R, Han C, Bruce D, Goodwin L, Pati A, Chen A, Palianiappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Rohde M, Brambilla E, Spring S, Göker M, Sikorski J, Wojke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228T). . Stand Genomic Sci 2010, 3, 136-144.
  • Han C, Gu W, Zhang X, Lapidus A, Nolan M, Copeland A, Lucas S, Kiss H, GlavinaDelRio T, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Schneider S, Rohde M, GökerPukall R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Detter JC. Complete genome sequence of Thermaerobacter marianensis type strain (7p75aT). . Stand Genomic Sci 2010, 3, 337-345.
  • Spring S, Rachel R, Lapidus A, Davenport K, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Detter JC, Tapia R, Han C, Heimerl T, Weikl F, Brambilla E, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Thermosphaera aggregans type strain (M11TLT). . Stand Genomic Sci 2010, 2, 245-259.
  • Chertkov O, Sikorski J, Brambilia E, Lapidus A, Copeland A, GlavinaDelRio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter CD, Bruce D, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Spring S, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz K, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Aminobacterium colombiense type strain (ALA-1T). . Stand Genomic Sci 2010, 2, 280-289.
  • Bartossek R, Nicol GW, Lanzen A, Klenk HP, Schleper C. Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context. Environ Microbiol 2010, 12, 1075-1088.
  • Efterharzadeh B, Hamedi J, Mohammadipanah F, Khodagholi F, Maghsoudi N, Klenk HP. Inhibition of oxidative stress-induced amyloid b-formation in NT2 neurons by culture filtrate of a strain of Streptomyces antibioticus. Appl Microbiol Biotechnol 2010, 86, 1805-1811.
  • Spring S, Scheuner C, Lapidus A, Lucas S, GlavinaDelRio T, Tice H, Copeland A, Cheng JF, Chen F, Nolan M, Saunders E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Lykidis A, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Goodwin L, Detter JC, Brettin T, Rohde M, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. The genome sequence of Methanohalophilus mahii SLPT reveals differences in the energy metabolism among members of Methanosarcinaceae inhabiting freshwater and saline environments. . Archaea 2010, 6, 690737.
  • Stielow B, Bubner B, Hensel G, Münzenberger B, Hoffmann P, Klenk HP, Göker M. The neglected hypogeous fungus Hydnotrya bailii Soehner (1959) is a widespread sister taxon of Hydnotrya tulasnei (Berk.) Berk. & Broome (1846) . Mycol Progress 2010, 9, 195-203.
  • Mavromatis K, Sikorski J, Lapidus A, GlavinaDelRio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Meincke L, Sims D, Chertkov O, Han C, Brettin T, Detter JC, Wahrenburg C, Rohde M, Pukall R, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-1AT). Stand Genomic Sci 2010, 9-18.
  • GlavinaDelRio T, Abt B, Spring S, Lapidus A, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, lIvanova N, Mavrommatis K, Mikhaikova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Saunders E, Detter JC, Brettin T, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lucas S. Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034T). Stand Genomic Sci 2010, 2, 87-95.
  • Pukall R, Lapidus A, GlavinaDelRio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Mavromatis K, Ivanova N, Ovchinnikova G, Amrita P, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Meincke L, Sims D, Brettin T, Detter JC, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Kyrpides NC, Klenk HP, Hugenholtz P. Complete genome sequence of Conexibacter woesei type strain(ID131577T). Stand Genomic Sci 2010, 2, 212-219.
  • Spring S, Nolan M, Lapidus A, GlavinaDelRio T, Copeland A, Tice H, Cheng JF, Lucas S, Land M, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavrommatis K, Mikhaikova N, Pati A, Chen A, Palaniappan K, Hauser L, Chang YJ, Jeffries CD, Munk C, Kiss H, Chain P, Han C, Brettin T, Detter JC, Schuler E, Goker M, Rohde M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Desulfohalobium retbaense type strain (HR100T). Stand Genomic Sci 2010, 2, 38-48.
  • Nolan M, Sikorski J, Davenport K, Lucas S, GlavinaDelRio T, Tice H, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova M, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Tapia R, Brettin T, Detter JC, Han C, Yasawong M, Rohde M, Tindall BJ, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of Ferrimonas balearica type strain (PATT). Standards in Genomic Sciences 2010, 3(2), 174-182.
  • Ivanova N, Sikorski J, Jando M, Munk C, Lapidus A, GlavinaDelRio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Mavrommatis K, Mikhailova N, Pai A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Meincke L, Brettin T, Detter JC, Han C, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Geodermatophilus obscurus type strain (G-20T). Stand Genome Sci 2010, 2, 158-167.
  • Ivanova N, Sikorski J, Jando M, Lapidus A, Nolan M, Lucas S, GlavinaDelRio T, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Saunders E, Han C, Detter JC, Brettin T, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Gordonia bronchialis type strain (3410T). Stand Genomic Sci 2010, 2, 19-28.
  • Ivanova N, Daum C, Lang E, Abt B, Kopitz M, Saunders E, Lapidus A, Lucas S, GlavinaDelRio T, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Mavromatis K, Pati A, Mikhaikova N, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brettin T, Rohde M, Goker M, Bristow J, Markowitz V, Eisen JA, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Haliangium ochraceum type strain (SMP-2T). Standards in Genomic Sciences 2010, 2(1), 96-106.
  • Pukall R, Lapidus A, GlavinaDelRio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, LaButti K, Pati A, Ivanova N, Mavromatis K, Mikhailova N, Pitluck S, Bruce D, Goodwin L, Land M, Hauser L, Chang YJ, Jeffries CD, Chen A, Palaniappan K, Chain P, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Brettin T. Complete genome sequence of Kribbella flavida type strain (IFO 14399T). Stand Genomic Sci 2010, 2, 186-193.
  • Brambilla E, NgatchouDjao OD, Daligault H, Lapidus S, Lucas S, Hammon N, Nolan M, Tice H, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Spring S, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847T) . Standards in Genomic Sciences 2010, 3(2), 203-211.
  • Tice H, Mayiraj S, Sims D, Lapidus A, Nolan M, Lucas S, GlavinaDelRio T, Copeland A, Cheng JF, Meincke L, Bruce D, Goodwin L, Pitluck O, Ivanova N, Mavrommatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brettin T, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Chen F. Complete genome sequence of Nakamurella multipartite type strain (Y-104T). Stand Genomic Sci 2010, 2, 168-175.
  • Göker M, Held B, Lucas S, Nolan M, Yasawong M, GlavinaDelRio T, Tice H, Cheng JF, Bruce D, Detter JC, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palianiappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Sikorski J, Pukall R, Wojke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of Olsenella uli type strain (AVPI D76D-27CT). Standards in Genomic Sciences 2010, 3, 76-84.
  • Harmon-Smith M, Celia L, Chertkov O, Lapidus A, Copeland A, GlavinaDelRio T, Nolan M, TLucas S, Tice H, Cheng JF, Han C, Detter CJ, Bruce D, Goodwin L, Pitluck S, Pati A, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Goker M, Beck B, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, HugenhChen F. Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300T). Stand Genomic Sci 2010, 2, 220-227.
  • Sikorski J, Lapidus A, Copeland A, Misra M, GlavinaDelRio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Jando M, Schneider S, Bruce D, Goodwin L, Pitluck S, Liolios K, Mikhailova N, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Chertkov O, Land M, Hauser L, Cheng YM, Jeffries CD, Brettin T, Detter JC, Han C, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Segniliparus rotundus type strain (CDC 1076T). Stand Genomic Sci 2010, 2, 203-211.
  • Pati A, LaButti K, Pukall R, Nolan M, GlavinaDelRio T, Tice H, Cheng JF, Lucas S, Chen F, Copeland A, Ivanova N, Mavromatis K, Mikhailova N, Pitluck S, Bruce D, Goodwin L, Land M, Hauser L, Chang YJ, Jeffries CD, Chen A, Palaniappan K, Chain P, Brettin T, Sikorski J, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of Sphaerobacter thermophiles strain (S 6022T). Stand Genomic Sci 2010, 2, 49-56.
  • Lail K, Sikorski J, Saunders E, Lapidus A, GlavinaDelRio T, Copeland A, Tice H, Cheng JF, Lucas S, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Amrita P, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Brettin T, Detter JC, Schultze A, Rohde M, Tindall BJ, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Chen F. Complete genome sequence of Spirosoma linguale type strain (1T). Stand Genomic Sci 2010, 2, 176-185.
  • Nolan M, Sikorski J, Jando M, Lucas S, Lapidus A, GlavinaDelRio T, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Sims D, Meincke L, Brettin T, Han C, Detter JC, Bruce D, Goodwin L, land M, Hauser L, Chang YJ, Jeffries CD, Ivanova N, Mavrommatis K, Mikhaikova N, Chen A, Palaniappan K, Chain P, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Streptosporangium roseum type strain (NI 9100T). Stand Genomic Sci 2010, 2, 29-37.
  • Sikorski J, Munk C, Lapidus A, NgatchouDjao ODN, Lucas S, GavinaDelRio T, Nolan M, Tice H, Han C, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova M, Mavromatis K, Ovchinnikova G, Pati A, Sims D, Meincke L, Brettin T, Detter JC, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Lang E, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Sulfurimonas autotrophica type strain (OK10T). Standards in Genomic Sciences 2010, 3(2), 194-202.
  • Sikorski J, Lapidus A, Copeland A, GlavinaDelRio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Pitluck O, Ovchinnikova G, Pati A, Ivanova N, Mavrommatis K, Chen A, Palaniappan K, Chain P, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Detter JC, Han C, Rohde M, Lang E, Spring S, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Sulfurospirillum deleyianum type strain (5175T). Stand Genomic Sci 2010, 2, 149-157.
  • Kiss H, Cleland D, Lapidus A, Lucas S, GlavinaDelRio T, Nolan M, Tice H, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Lu M, Brettin T, Detter JC, Göker M, Tindall BJ, Beck B, McDermott TR, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Cheng JF. Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1T). Standards in Genomic Sciences 2010, 3(2), 153-162.
  • Wirth R, Sikorski J, Brambilla E, Misra M, Lapidus A, Copeland A, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Tapia R, Bruce D, Goodwin L, Pitluck S, Pati A, Anderson I, Ivanova N, Mavromatis K, Mikhailova N, Chen A, Palaniappan K, Bilek Y, Hader T, Land M, Hauser L, Chang YJ, Jeffries CD, Tindall BJ, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Thermocrinis albus type strain (HI 11/12T). Stand Genomic Sci 2010, 2, 194-202.
  • Pitluck S, Yasawong M, Munk S, Nolan M, Lapidus A, Lucas S, GlavinaDelRio T, Tice H, Cheng JF, Bruce D, Detter C, Tapia R, Han C, Goodwin L, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palianiappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Göker M, Wojke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Krpides NC. Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228PT). Standards in Genomic Sciences 2010, 3(2), 108-116.
  • Gronow S, Weinitz S, Lapidus A, Nolan M, Ivanova N, GlavinaDelRio T, Copeland A, Feng C, Tice H, Pitluck S, Cheng JF, Saunders E, Brettin T, Han C, Detter JC, Bruce D, Goodwin L, land M, Hauser L, Chang YJ, Jeffries CD, Pai A, Mavrommatis K, Mikhaikova N, Chen A, Palaniappan K, Chain P, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lucas S. Complete genome sequence of Veillonella parvula type strain (Te3T). Stand Genomic Sci 2010, 2, 57-65.
  • Mavromatis K, Sikorski J, Pabst E, Teshima H, Lapidus A, Lucas S, Nolan M, GlavinaDelRio T, Cheng JF, Bruce D, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mikhailova N, Pati A, Chen A, Palianiappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Spring S, Göker M, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klen HP. Complete genome sequence of Vulcanisaeta distributa type strain (IC-017T). Standards in Genomic Sciences 2010, 3(2), 117-125.
  • Foster B, Pukall R, Abt B, Nolan M, GlavinaDelRio T, Nolan M, Chen F, Lucas S, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, Bruce D, Goodwin L, Ivanova N, Mavromatis K, Pati A, Mikhailova N, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07T). Stand Genomic Sci 2010, 2, 1-8.
  • Mavromatis K, Abt B, Brambilla E, Lapidus A, Copeland A, Deshpande S, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter CD, Woyke T, Goodwin L, Pitluck S, Held B, Brettin T, Tapia R, Ivanova N, Mikhailova N, Pati A, Liolios K, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24T). Stand Genomic Sci 2010, 2, 290-299.
  • Copeland A, O'Connor K, Lucas S, Lapidus A, Berry KW, Detter JC, GlavinaDelRio T, Hammon N, Dalin E, Tice H, Pitluck S, Bruce D, Goodwin L, Han C, Tapia R, Sounders E, Schmutz J, Brettin T, Larimer F, Land M, Hauser L, Vargas C, Nieto JJ, Kyrpides NC, Ivanova N, Göker M, Woyke T, Klenk HP, Csonka LN, Woyke T. Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T). Stand Genomic Sci 2010, 5, 279-388.
  • Auch AF, vonJan M, Klenk HP, Goker M. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci 2010, 2, 117-134.
  • Labeda DP, Price NP, Tan GYA, Goodfellow M, Klenk HP. Emended description of the genus Actinokineospora Hasegawa 1988 and transfer of Amycolatopsis fastidiosa Henssen et al. 1987 as Actinokineospora fastidiosa comb. nov. International Journal of Systematic and Evolutionary Microbiology 2010, 60(6), 1444-1449.
  • Ptluck S, Yasawong M, Held B, Lapidus A, Nolan M, Copeland A, Lucas S, GlavinaDelRio T, Tice H, Cheng JF, Chertkov O, Goodwin L, Tapia R, Han C, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Pukall R, Spring S, Rohde M, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3T) . Standards in Genomic Sciences 2010, 3, 285-293.
  • Nhi-Cong LT, Mikolasch A, Awe S, Sheikhany H, Klenk HP, Schauer F. Oxidation of aliphatic,branched chain and aromatic hydrocarbons by Nocardia cyriacigeorgica isolated from oil-polluted sand samples collected in the Saudi Arabian desert. J Basic Microbiol 2010, 50, 241-253.
  • LaButti K, Mayiraj S, Clum A, Lucas S, GlavinaDelRio T, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Goodwin L, Chen A, Palianiappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Spring S, Göker M, Wojke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207T). Standards in Genomic Sciences 2010, 3(1), 85-92.
  • Auch AF, vonJan M, Klenk HP, Goker M. Standard operational procedure for calculating genome-to-genome distances based on high-scoring sequence pairs. Stand Genomic Sci 2010, 2, 142-148.
  • Wagner-Dobler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, Hahnke S, Han C, Jahn D, Kalhoefer D, Kiss H, Klenk HP, Kyrpides N, Liebi W, Liesegang H, Meincke L, Pati A, Petersen J, Piekarski T, Pommerenke C, Pradella S, Pukall R, Rabus R, Stackebrandt E, Thole S, Thompson L, Tielen P, Tomasch J, vonJan M, Wanphrut N, Wichels A, Zech H, Simon M. The complete genome sequence of the algal symbiont Dinoroseobacter shibae - a hitchhiker's guide to life in the sea. ISME 2010, 4, 61-77.
  • Sun W, Dong GX, Zhang YQ, Wei YZ, Li QP, Yu LY, Klenk HP, Zhang YQ. Actinoplanes sichuanensis sp. nov. and Actinoplanes xinjiangensis sp. nov.. . Int J Syst Evol Microbiol 2009, 59.
  • Chen YG, Zhang YQ, Wang YX, Liu ZX, Klenk HP, Xiao HD, Tang SK, Cui XL, Li WJ. Bacillus neizhouensis sp. nov., a halophilic marine bacterium isolated from sea anemone. Int J Sysst Evol Microbiol 2009, 59, 3035-3039.
  • Clum A, Nolan M, Lang E, GlavinaDelRio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palianiappan K, Goker M, Spring S, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Bristow J, Eilsen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT). Stand Genomic Sci 2009, 1, 38-45.
  • Lapidus A, Pukall R, Labuttii K, Copeland A, GlavinaDelRio T, Nolan M, Chen F, Lucas S, Cheng JF, Bruce D, Goodwin L, Pitluck S, Rohde M, Goker M, Pati A, Ivanova N, Mavromatis K, Chen A, D'haeseleer P, Chain P, Bristow J, Elsen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10T). Stand Genomic Sci 2009, 1, 3-11.
  • Copeland A, Spring S, Goker M, Schneider S, Lapidus A, GlavinaDelRio T, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Hauser L, Chang YJ, Jeffries CD, Saunders L, Brettin T, Detter JC, Han C, Chain P, Bristow J, Elsen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lucas S. Complete genome sequence of Desulfomicrobium baculatum type strain (XT). Stand Genomic Sci 2009, 1, 29-37.
  • Yassin AF, Hupfer H, Klenk HP, Siering C. Desmospora activa gen. nov., sp. nov., a thermoactinomycete isolated from sputum of a patient with suspected pulmonary tuberculosis, and emended description of Thermoactinomycetaceae Matsuo et al. 2006. . Int J Syst Evol Microbiol 2009, 59, 454-459.
  • Qin S, Chen HH, Klenk HP, Zhao GZ, Li J, Xu LH, Li WJ. Glycomyces scopariae sp. nov. and Glycomyces mayteni sp. nov., isolated from two medicinal plants in China. Int J Syst Evol Microbiol 2009, 59, 454-459.
  • Chen YG, Zhang YQ, Liu ZX, Zhuang DC, Klenk HP, Tang SK, Cui XL, Li WJ. Halobacillus salsuginis sp. nov. a moderately halophilic bacterium from a subterranean brine. Int J Sysst Evol Microbiol 2009, 59, 2505-2509.
  • Chen YG, Zhang YQ, Huang HY, Klenk HP, Tang SK, Huang K, Chen QH, Cui XL, Li WJ. Haolomonas zhanjiangensis sp. nov. a holophilic bacterium isolated from sea urchin. Int J Syst Evol Microbiol 2009, 59, 2888-2893.
  • Jurado V, Kroppenstedt RM, Saiz-Jimenez C, Klenk HP, Mounlee D, Laiz L, Couble A, Potter G, Boiron P, Rodriguez NV. Hoyosella altamirensis gen. nov. sp. nov., a new member of the order Actinomycetales isolated from a cave biofilm. Int j Syst Evol Microbiol 2009, 59, 3105-3110. In Preparation.
  • Tortoli E, Baruzzo S, Heijdra Y, Klenk HP, Lauria S, Mariotti A, vanIngen J. Mycobacterium insubricum sp. nov. Int J Syst Evol Microbiol. Int J Syst Evol Microbiol 2009, 59, 1518-1523.
  • Yassin AF, Sproer C, Hufer H, Siering C, Klenk HP. Nocardiopsis potens sp. nov., isolated from household waste. Int J Syst Evol Microbiol 2009, 59, 2729-2733.
  • Qin S, Zhao GZ, Klenk HP, Li J, Zhu WY, Xu LH, Li WJ. Nonomuraea antimicrobica sp. nov. an endophytic actinomycete isolated from the leaf of Maytenus austroyunnanensis. Int J Syst Evol Microbiol 59. Syst Evol Microbiol 2009, 59, 2747-2751.
  • Bouizgarne B, Lanoot B, Loqman S, Sproer C, Klenk HP, Swings J, Ouhdouch Y. Streptomyces marokkonensis sp. nov., a novel actinomycete isolated from rhizosphaere soil of Argania Spinoza L.. Int J Syst Evol Microbiol 2009, 59, 2857-2863.
  • Loqman S, Bouizgarne B, AitBarka E, Clement C, vonJan M, Sproer C, Klenk HP, Ouhdouch Y. Streptomyces thinghirensis sp. nov., isolated from rhizosphaeral soil of Vitis vinifera. Int J Sysst Evol Microbiol 2009, 59, 3063-3067.
  • Zhao XQ, Li WJ, Jiao WC, Li Y, Yang TH, Yuan WJ, Zhang YQ, Klenk HP, Suh JW, Bai FW. Streptomyces xinghaiensis sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 2009, 59, 2870-2874.
  • Kim KK, Lee KC, Klenk HP, Oh HM, Lee J-S. Gordonia kroppenstedtii sp. nov., a phenol-degrading actinomycete isolated from a polluted stream. . Int J Syst Evol Microbiol 2009, 59, 1992-1996.
  • Sun H, Lapidus A, Nolan M, Lucas S, GlavinaDelRio T, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, NRohde M, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509T). . Stand Genomic Sci 2009, 3, 325-337.
  • Land M, Pukall R, Abt B, Göker M, Rohde M, GlavinaDelRio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Hauser L, Chang YJ, Jeffries CD, Saunders L, Brettin T, Detter JC, Han C, Chain P, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. A Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122T). Stand Genomic Sci 2009, 1, 21-28.
  • Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D'haeseleer P, Zemia A, Singer M, lapidus A, Nolan M, Copeland A, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 2009, 462, 1056-1060.
  • Land M, Lapidus A, Mayiraj S, Chen R, Copeland A, GlavinaDelRio T, Nolan M, Lucas S, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Pitluck S, Rohde M, Goker M, Pati A, Ivanova N, Mavromatis K, Chen A, Hauser L, Chang YJ, Jeffries CD, Brettin T, Detter JC, Han C, Chain P, Tindall BJ, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Actinosynnema mirum type strain (101T). Stand Genomic Sci . 1 2009, 46-53.
  • LaButti K, Pukall R, Steenblock K, GlavinaDelRio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Saunders E, Brettin T, Detter JC, Han C, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of Anaerococcus prevotii type strain (PC1T). Stand Genomic Sci 2009, 1, 159-165.
  • Copeland A, Sikorski J, Lapidus A, Nolan M, GlavinaDelRio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Pukall R, Chertkov O, Brettin T, Han C, Detter JC, Kuske C, Bruce D, Goodwin L, Ivanova N, Mavromatis K, Mikhailova N, Chen A, Palaniappan K, Chain P, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Detter JC. Complete genome sequence of Atopobium parvulum type strain (IPP 1246T). Stand Genomic Sci 2009, 1, 166-173.
  • Mavromatis K, Gronow S, Saunders E, Land M, Lapidus A, Copeland A, GlavinaDelRio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Pati A, Ivanova N, Chen A, Palaniappan K, Chain P, Hauser L, Chang YJ, Jeffries CD, Brettin T, Detter JC, Han C, Bristow J, Goker M, Rohde M, Eisen JA, Markowitz V, Kyrpides NC, Klenk HP, Hugenholtz P. Complete genome sequence of Capnocytophaga ochraceae type strain (VPI 2845T). Stand Genomic Sci 2009, 1, 101-109.
  • Copeland A, Lapidus A, GlavinaDelRio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Mikhaikova N, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Chain P, Land M, Hauser L, Chang YJ, Jeffries CD, Chertkov O, Brettin T, Detter JC, Han C, Ali Z, Tindall BJ, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Catenulispora acidiphila type strain (ID 139908T). Stand Genomic Sci 2009, 1, 119-125.
  • Mavrommatis K, Pukall R, Rohde C, Chen F, Sims D, Brettin T, Kuske C, Detter JC, Han C, Lapidus A, Copeland A, GlavinaDelRio T, Nolan M, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Ovchinnikova G, Pati A, Ivanova N, Chen A, Palaniappan K, Chain P, D'haeseeler P, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Rohde M, Klenk HP, Kyrpides NC. Complete genome sequence of Cryptobacterium curtum type strain (12-3). Stand Genomic Sci 2009, 1, 93-100.
  • Ivanova N, Gronow S, Lapidus A, Copeland A, GlavinaDelRioRio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Brettin T, Detter JC, Han C, Pitluck S, Mikailova N, Pati A, Mavromatis K, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries Cd, Chain P, Rohde C, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Goker M, Rohde M, Kyrpides NC, Klenk HP. Complete genome sequence of Dyadobacter fermentans type strain (NS114T). Stand Genomi Sci 2009, 1.
  • Lang E, Lapidus A, Chertkov O, Brettin T, Detter JC, Han C, Copeland A, GlavinaDelRio T, Nolan M, Feng C, Lucas S, Tice H, Cheng JF, Land M, Hauser L, Chang YJ, Jeffries CD, KopitZ M, Bruce D, Goodwin L, Pitluck S, Ovchinnikova G, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Chain P, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Goker M, Rohde M, Kyrpides NC, Klenk HP. Complete genome sequence of Dyadobacter fermentans type strain (NS114T). Stand Genomic Sci 2009, 1, 133-140.
  • Saunders E, Pukall R, Abt B, Lapidus A, GlavinaDelRio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Paliappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Meinecke L, Sims D, Brettin T, Detter JC, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Han C. Complete genome sequence of Eggerthella lenta type strain (VPI 0255T). Stand Genomic Sci 2009, 1, 174-182.
  • Malfatti S, Tindall BJ, Schneider S, Fahnrich R, Lapidus A, LaButtii K, Copeland A, GlavinaDelRio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Anderson I, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, D'Haeseleer P, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Chain P. Complete genome sequence of Halogeometricum borinquense type strain (PR3T). Stand Genomic Sci 2009, 1, 150-158.
  • Tindall BJ, Schneider S, Lapidus A, Copeland A, GlavinaDelRio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Pitluck S, Mikhailova N, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Chain P, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Han C, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC, Detter JC. Complete genome sequence of Halomicrobium mukohataei type strain (arg-2T). Stand Genomic Sci 2009, 1, 270-277.
  • Anderson I, Tindall BJ, Pomrenke H, Goker M, Lapidus A, Nolan M, Copeland A, GlavinaDelRio T, Chen F, Tice H, Cheng J-F, Lucas S, Chertkov O, Bruce D, Brettin T, Detter JC, Han C, Goodwin L, Land M, Hauser L, Chang YJ, Jeffries CD, Pitluck S, Pati A, Mavromatis K, Ivanova N, Ovchinnikova G, Chen A, Palaniappan K, Chain P, Rohde M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Halorhabdus utahensis type strain (AX-2T). Stand Genomic Sci 2009, 1, 218-225.
  • Pukall R, Gehrich-Schoter G, Lapidus A, Nolan M, GlavinaDelRio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Copeland A, Saunders E, Brettin T, Detter JC, Bruce D, Goodwin L, Pati A, Ivanova N, Mavromatis K, Ovrchinnikova G, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Han C. Complete genome sequence of Jonesia denitrificans type strain (55134T). Stand Genomic Sci 2009, 1, 262-269.
  • Clum A, Tindall BJ, Sikorski J, Ivanova N, Mavromatis K, Lucas S, GlavinaDelRio T, Nolan M, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, Kuske C, Bruce D, Goodwin L, Ovchinikova G, Pati A, Mikhaikova N, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T). Stand Genomic Sci 2009, 1, 308-316.
  • Nolan M, Tindall BJ, Pomrenke H, Lapidus A, Copeland A, GlavinaDelRio T, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Han C, Bruce D, Goodwin L, Chain P, Pitluck S, Ovchinikova G, Pata A, Ivanova N, Mavromatis K, Chen A, Paliappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Detter JC. Complete genome sequence of Rhodothermus marinus type strain (R-10T). Stand Genomic Sci 2009, 1, 283-291.
  • Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, GlavinaDelRio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, Kuske C, Bruce D, Goodwin L, Chain P, D'haeseleer P, Chen A, Palaniappan K, Ivanova N, Mavromatis K, Mikhailova N, Rohde M, Tindall BJ, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of Saccharomonospora viridis type strain (P101T). Stand Genomic Sci 2009, 1, 141-149.
  • Ivanova N, Kikorski J, Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, GlavinaDelRio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, D'haeseleer P, Chain P, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Goker M, Pukall R, Klenk HP, Kyrpides NC. Complete genome sequence of Sanguibacter keddieii type strain (ST-74T). Stand Genomic Sci 2009, 1, 110-118.
  • Pukall R, Lapidus A, Nolan M, Copeland A, GlavinaDelRio T, Lucas S, Chen F, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Kuske C, Brettin T, Detter JC, Han C, Pitluck S, Pati A, Mavromatis K, Ivannova N, Ovchinnikova G, Chen A, Palaniappan K, Schneider S, Rohde M, Chain P, D'haeseleer P, Goker M, Bristow J, Eisen JA, Markowitz V, Kyrpides NC, Klenk HP, Hugenholtz P. Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1T). Stand Genomic Sci 2009, 1, 234-241.
  • Han C, Sikorski J, Lapidus A, Nolan M, GlavinaDelRio T, Tice H, Cheng JF, Lucas S, Chen F, Copeland A, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Bruce D, Goodwin L, Pitluck S, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Saunders E, Brettin T, Goker M, Tindall BJ, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Detter JC. Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1T). Stand Genomic Sci 2009, 1, 226-233.
  • Nolan M, Gronow S, Lapidus A, Ivanova N, Copeland A, Lucas S, GlavinaDelRio T, Nolan M, Chen F, Tice H, Pitluck S, Cheng JF, Sims D, Meinecke L, Bruce D, Goodwin L, Brettin H, Han C, Detter JC, Ovchinikova G, Pati A, Mavromatis K, Mikhaikova N, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Sproer C, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Chain P. Complete genome sequence of Streptobacillus moniliformis type strain (9901T). Stand Genomic Sci 2009, 1, 300-307.
  • Chovatia M, Sikorski J, Schoder M, Lapidus A, Nolan M, Tice H, GlavinaDelRio T, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Saunders E, Detter JC, Brettin T, Rohde M, Goker M, Spring S, Bristow J, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Eisen JA. Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883T). Stand Genomic Sci 2009, 1, 254-261.
  • Sims D, Brettlin T, Detter JC, Han C, Lapidus A, Copeland A, GlavinaDelRio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Ovchinnikova G, Pati A, Ivanova N, Mavromatis K, Chen A, D'haeseeler P, Chain P, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Schneider S, Göker M, Pukall R, Kyrpides NC, Klenk HP. Complete genome sequence of Kytococcus sedentarius type strain (541T). Stand Genomic Sci 1:12-20. Stand Genomic Sci 2009, 1, 12-20.
  • Munk C, Lapidus A, Copeland A, Jando M, Mayilraj S, GlavinaDelRio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Chain P, Pitluck S, Goker M, Ovchinikova G, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequences of Stackebrandtia nassauensis type strain (LLR-40K-21T). Standards in Genomic Sciences 2009, 1(3), 234-241.
  • Nhi-Cong LT, Mikolasch A, Klenk HP, Schauer F. Degradation of the multiple branched alkane 2,6,10,14-tetramethylpentadecane (pristine) in Rhodococcus ruber and mycobacterium neoaurum. Intl. Biodeterioration 7 Biodegradation 2009, 63, 201-207.
  • Li J, Chen C, Zhao G-Z, Klenk HP, Pukall R, Zhang Y-Q, Tang S-K, Li WJ. Description of Dietzia lutea sp. nov., isolated from a desert soil in Egypt. Syst Appl Microbiol 2009, 32, 118-123.
  • Strittmatter A, Liesegang H, Rabus R, Decker I, Amann J, Sonke A, Henne A, Fricke WF, Martinez-Arias R, Bartels D, Goesmann A, Krause L, Puhler A, Klenk HP, Richter M, Schuler M, Glockner FO, Meyerdieks A, Gottschalk G, Amann R. Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulphate reducer oxidizing organic carbon completely to carbon dioxide. Environ Microbiol 2009, 11, 1038-1055.
  • Li J, Zhao G-Z, Zhang Y-Q, Klenk HP, Pukall R, Qin S, Xu L-H, Li W-J. Dietzia schimae sp. nov. and Dietzia cerdidiphylii sp. nov., from surface-sterilized plant tissues. Int J Syst Evol Microbiol 2008, 58, 2549-2554.
  • Jurado V, Boiron P, Kroppenstedt RM, Laurent F, Couble A, Laiz L, Klenk HP, Gonzales JM, Saiz-Jimenez C, Mounlee D, Bergeron E, Roriguez NV. Nocardia altamirensis sp. nov., isolated from Altamira Cave, Cantabria, Spain. Int j Syst Evol Microbiol 2008, 58, 2210-2214.
  • Antranikian G, Ruepp A, Gordon PM, Ballschmiter M, Zibat A, Stark M, Sensen CW, Frishman D, Liebl W, Klenk HP. Rapid access to genes of biotechnologically useful enzymes by partial genome sequencing: the thermoalkaliphile Anaerobranca gottschalkii. Journal of Molecular Microbiology and Biotechnology 2008, 16(1-2), 81-90.
  • Brugger K, Chen L, Stark M, Zibat A, Redder P, Ruepp A, Awayez M, She Q, Garrett RA, Klenk HP. The genome of hyperthermus butylicus: a sulphur-reducing, peptide fermenting, neutrophilic crenarchaeote growing up to 108oC. Archaea 2007, 2, 127-135.
  • Prato S, Cannio R, Klenk HP, Contursi P, Rossi M, Bertolucci S. pIT3, a cryptic plasmid isolated from the hyperthermophilic crenarchaeon Sulfolobus solfataricus IT3. Plasmid 2006, 56(1), 35-45.
  • Torarinsson E, Klenk HP, Garrett RA. Divergent transcriptional and translational signals in Archaea. Environ Microbiol 2005, 7, 47-54.
  • Treusch AH, Leininger S, Kietzin A, Schuster S, Klenk HP, Schleper C. Novel genes for nitrite reductase and Amo-related proteins indicat a role of uncultivated mesophilic crenarchaeota in nitogen cycling. Environ Microbiol 2005, 7.
  • Chen L, Brugger K, Skovgaard M, Redder P, She Q, Torarinsson E, Greve B, Awayez M, Zibat A, Klenk HP, Garrett RA. The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J Bacteriol 2005, 187, 4992-49999.
  • Siebers B, Tjaden B, Michalke K, Dorr C, Ahmed H, Zaparty M, Gordon P, Sensen CW, Zibat A, Klenk HP, Schuster S, Hensel R. Reconstruction of the central carbohydrate metabolism of Thermoproteus tenax using genomic and biochemical data. J Bacteriol 2004, 186, 2179-2194.
  • Rabus R, Ruepp A, Frickey T, Rattei T, Fartmann B, Stark M, Bauer M, Zibat A, Lombardot T, Becker I, Amann J, Gellner K, Teeling H, Leuschner WD, Glockner FO, Lupas AN, Amann R, Klenk HP. The genome of Desulfotalea psychrophila, a sulphate-reducing bacterium from permanently cold Arctic sediments. Environ Microbiol 2004, 6, 687-902.
  • Henne A, Bruggemann H, Raasch C, Wiezer A, Hartsch T, Liesegang H, Johann A, Lienhard T, Gohl O, Martinez-Arias R, Jacobi C, Starkuviene V, Schienczeck S, Dencker S, Huber R, Klenk HP, Kramer W, Merkl R, Gottschalk G, Fritz HJ. The genome sequence of the extreme thermophile Thermus thermophiles. Nat Biotechnol 2004, 22, 547-553.
  • Quaiser A, Ochsenreiter T, Klenk HP, Kietzin A, Treusch AH, Meurer G, Eck J, Sensen CW, Schleper C. First insight into the genome of an uncultivated crenarchaeote from soil. Environ Microbiol 2002, 4, 603-611.
  • Deppenmeier U, Johann A, Hartsch T, Merkl R, Schmitz RA, Martinez-Arias R, Henne A, Wiezer A, Baumer S, Jacobi C, Bruggemann H, Lienard T, Christmann A, Bomeke M, Steckel S, Bhattacharyya A, Lykidis A, Overbeek R, Klenk KA, Gunsalus RP, Fritz HJ, Gottschalk G. The genome of Methanosarcina mazei:evidence for lateral gene transfer between Bacteria and Archaea. J Mol Microbiol Biotechnol 2002, 4, 453-461.
  • Gellner K, Eiselt R, Hustert E, Arnold HP, Koch I, Haberl M, Degimann CJ, Burk O, BuntefuB D, Escher S, Bishop C, Kobe HG, Brinkmann U, Klenk HP, Kleine K, Meyer UA, Wojnowski L. Genomic organization of the human CYP3A locus: identification of a new inducible CYP3A gene expressed in the liver, testis and prostate. Pharmacogenetics 2001, 11, 111-121.
  • Arnold HP, Zillig W, Ziese U, Holz I, Crosby M, Utterback TR, Weidmann JF, Kristjanson JK, Klenk HP, Nelson KE, Fraser CM. A novel Lipothrixvirus, SIFV, of the extremely thermophilic crenarchaeon Sulfolobus. Virology 2000, 267, 251-266.
  • Eiselt R, Domanski TL, Zibat A, Muller R, Presecan-Siedel E, Hustert E, Zanger UM, Brockmoller J, Klenk HP, Meyer UA, Khan KK, He YA, Halpert JR, Wojnowski L. Identification and functional characterization of eight cyp3A4 protein variants. Pharmacogenetics 2000, 11, 447-458.
  • Zwickel P, Ng D, Woo KM, Klenk HP, Goldberg AL. An archaebacterial ATPase, homologous to ATPases in the eukaryotic 26S proteasome, activates protein breakdown by 20S proteasomes. J BiolChem 1999, 274, 26008-26014. In Preparation.
  • Klenk HP, Meier TD, Durovic P, Schwass V, Lottspeich F, Dennis PP, Zillig W. RNA polymerase of Aquifex pyrophilus: implications for the evolution of the bacterial rpoBC-operon and the extreme thermophilic bacteria. J Mol Evol 1999, 48, 528-541.
  • Keeling PJ, Klenk HP, Singh RK, Schenk ME, Sensen CW, Zillig W, Doolittle WF. Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry. Extremophiles 1998, 2, 391-393.
  • Prangishvili D, Klenk HP, Jakobs G, Schmiechen A, Hanselmann C, Holz I, Zillig W. Biochemical and phylogenetic characterization of the dUTPase from the archaeal virus SIRV. J Biol Chem 1998, 273, 6024-6029.
  • Emmerhoff OJ, Klenk HP, Birkeland NK. Characterization and sequence comparison of temperature-regulated chaperonins from the hyperthermophilic archaeon Archaeoglbus fulgidus. Gene 1998, 215, 431-438.
  • Siebers B, Klenk HP, Hensel R. PP, phosphofructokinase from Thermoproteus tenax, an archaeal descendant of an ancient line in the phosphofructokinase evolution. J Bacteriol 1998, 180, 2137-2143.
  • Kyrpides NC, Olsen GJ, Klenk HP, White O, Woese CR. Methanococcus jannaschii genome: revisited. Microb Comp Genomics 1997, 1, 329-338.
  • Bochar DA, Brown JR, Doolittle WF, Klenk HP, Lam W, Schenk ME, Stauffachter CV, Rodwell VW. 3-hydroxy-3-methylglutaryl coenzyme A reductase of Sulfolobus solfataricus. DNA sequences, phylogeny and expression in Escherichia coli of the hmgA gene, and purification and kinetic characterization of the gene product. J Bacteriol 1997, 179, 3632-3638.
  • Edgell DR, Klenk HP, Doolittle WF. Gene duplications in evolution of archaeal family B DNA polymerases. J Bacteriol 1997, 179, 2632-2640.
  • Schleper C, Holben W, Klenk HP. Recovery of crenarchaeotal rDNA sequences from freshwater lake sediments. Appl Environ Microbial 1997, 63, 321-323.
  • Tomb JF, White O, Kerlavage AR, Clayton RA, Sutton GG, Fleischmann RD, Ketchum KA, Klenk KP, Gill S, Dougherty BA, Nelson KE, Quackenbush J, Zhou L, Kirkness EF, Peterson S, Loftus B, Richardson DL, Dodson RJ, Khalak HG, Glodek A, McKenney K, Fitzgerald LM, Lee NH, Adams MD, Hickey EK, Berg DE, Gocayne JD, Utterback TR, Peterson JD, Kelley JM, Cotton MD, Weidman JM, Fujii C, Bowman C, Watthey L, Wallin E, Borodovsky M, Hayes WS, Karp P, Smith HO, Fraser CM, Venter JC. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 1997, 388, 539-547.
  • Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD, Richardson DL, Kerlavage AR, Graham DR, Krypides NC, Fleischmann RD, Quackenbush J, Lee NH, Sutton GG, Gill S, Kirkness EF, Dougherty BA, McKenney K, Adams MD, Loftus B, Peterson S, Reich CI, McNeil LK, Badger JH, Glodek A, Zhou L, Overbeek R, Gocayne JD, Weidman JF, McDonald L, Utterback TR, Cotton MD, Spriggs T, Artiach p, Kaine BP, Sykes SM, Sadow PW, D'Andrea KP, Bowman C, Fujii C, Garland SA, Mason TN, Olsen CJ, Fraser CM, Smith HO, Woese CR, Venter JC. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 1997, 390, 364-370.
  • Schleper C, Puhler G, Klenk HP, Zillig W. Picrophilus oshimae and Picrophilus torridus fam. nov. gen. nov., two species of hyperacidophilic, thermophilic, heterotrophic, anaerobic Archaea.. Int J Syst Bacteriol 1996, 46, 814-816.
  • Keeling PJ, Baldauf SL, Doolittle WF, Zillig W, Klenk HP. An infB-homolog in Sulfolobus acidocaldarius. Syst Appl Microbiol 1996, 19, 312-321.
  • Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, Blake JA, FitzGerald LM, Clayton RA, Gocayne JD, Kerlavage AE, Dougherty BA, Tomb JF, Adams MD, Reich CL, Overbeek R, Kirkness EF, Weinstock KG, Merrick JM, Glodek A, Scott JL, Geoghagen NSM, Weidman JF, Fuhmann JL, Nguyen D, Utterback TR, Kelley JM, Peterson JD, Sadow PW, Hanna MC, Cotton MD, Roberts KM, Hurst MA, Kaine BP, Borodovsky M, Klenk KP, Fraser CM, Smith HO, Woese CR, Venter JC. Complete genome sequence of the methanogenic archaeon Methanococcus jannaschii. Science 1996, 273, 1058-1073.
  • Keeling PJ, Klenk HP, Singh RK, Feeley O, Schleper C, Zillig W, Doolittle WF, Sensen CW. Complete nucleotide sequence of the Sulfolobus islandicus multicopy plasmid pRN1. Plasmid 1996, 35, 141-144.
  • Sensen CW, Klenk HP, Singh RK, Allard G, Chan CC-Y, Liu QY, Penny SL, Young F, Schlenk ME, Gaasterland T, Doolittle WF, Ragan MA, Charlebois RL. Organizational characteristics and information content of an archaeal genome: 156 kbp of sequence from Sulfolobus solfataricus P2. Mol Microbiol 1996, 22, 175-191.
  • Schleper C, Puhler G, Holz I, Gambacorta A, Janekovic D, Santarius U, Klenk HP, Zillig W. Picrophilus gen. nov. fam. nov: A novel heterotrophic, thermoacidophilic genus and family comprising archaea capable of growth around pH 0. J Bacteriol 1995, 177, 7050-7059.
  • Klenk HP, Zillig W, Lanzendorfer M, Grampp B, Palm P. Localization of protest lineages in a phylogenetic tree inferred from sequences of DNA-dependent RNA polymerases. Archiv fur protistenkunde 1995, 145, 221-230.
  • Prangishvili D, Klenk HP. A homolog of the small subunit of penicillin acylase is encoded in the genome of the extremely thermophilic archaeon Sulfolobus solfataricus. Syst Appl Microbiol 1994, 17, 169-171.
  • Lechmacher A, Klenk HP. Characterization and phylogeny of mcr11, a gene cluster encoding an iso-enzyme of methyl coenzyme M reductase from hyperthermophilic Methanotherms fervidus. Mol Gen Genet 1994, 243, 198-206.
  • Klenk HP. DNA-dependent RNA polymerase subunit B as a tool for phylogenetic reconstructions: Branching topology of the archaeal domain. J Mol Evol 1994, 38, 420-432.
  • Klenk HP, Palm P, Zillig W. DNA-dependent RNA polymerases as phylogenetic marker molecules. Syst Appl Microbiol 1994, 16, 138-147.
  • Lanzendorfer M, Langer D, Hain J, Klenk HP, Holz I, Arnold-Ammer I, Zillig W. Structure and function of the DNA-dependent RNA polymerase of Sulfolobus. Syst Appl Microbiol 1994, 16, 656-664.
  • Prangishvili D, Klenk HP. The gene for a 74 kDa DNA polymerase from the archaeon Sulfolobus solfataricus. Syst Appl Microbiol 1994, 16, 665-671.
  • Klenk HP, Zillig W. Archaea contain an open reading frame paralogous to the gene of the ribosomal protein S3. Syst Appl Microbiol 1993, 16, 22-24.
  • Montero CG, Klenk HP, Nieto JJ, Ventosa A. DNA-rDNA hybridization studies on Halococcus saccharolyticus and other halobacteria. FEMS Microbial Letters 1993, 111, 69-72.
  • Prangishvili D, Klenk HP. Nucleotide sequence of the gene for a 74 kDa DNA polymerase from the archaeon Sulfolobus solfataricus. Nucleic Acids 1993, 21, 2768.
  • Klenk HP, Schwass V, Zillig W. Nucleotide sequence of the genes encoding proline tRNA (UGG) and threonine tRNA (GGU) and consensus promotor model of Thermococcus celer. Biochem Biophys Acta . Biochim Biophys Acta 1993, 1171, 236-238.
  • Klenk HP, Schleper C, Schwass V, Brudler R. Nucleotide sequence, transcription and phylogeny of the gene encoding the superoxide dismutase of Sulfolobus acidocaldarius. Biochem Biophys Acta 1993, 1174, 95-98.
  • Klenk HP, Palm P, Lottspeich F, Zillig W. Component H of the DNA-dependent RNA polymerases of Archaea is homologous to a subunit shared by the three eucaryal nuclear RNA polymerases. Proc Natl Acad Sci USA 1992, 89, 407-410.
  • Klenk HP, Schwass V, Lottspeich F, Zillig W. Nucleotide sequence of the genes encoding the three largest subunits of the DNA-dependent RNA polymerase from the archaeum. Nucleic Acids Res 1992, 20, 4659.
  • Klenk HP, Schwass V, Zillig W. Nucleotide sequence of the genes encoding the L30, S12 and S7 equivalent ribosomal proteins from the archaeum Thermococcus celer. Nucleic Acids Res 1991, 19, 6047.
  • Zillig W, Holz I, Janecovic D, Klenk HP, Imsel E, Trent J, Wunderl S, Forjaz WH, Coutinho R, ferreira T. Hyperthermus butylicus, a hyperthermophilic sulphur-reducing archaebacterium that ferments peptides. J Bacteriol 1990, 172, 3959-3965.
  • Puhler G, Leffers H, Gropp F, Palm P, Klenk HP, Lottspeich F, Garrett RA, Zilig W. Archaebacterial DNA-dependent RNA polymerases testify to the evolution of the eukaryotic nuclear genome. Proceedings of the National Academy of Sciences of the USA 1989, 86(12), 4569-4573.
  • Zillig W, Klenk HP, Palm P, Leffers H, Puhler G, Gropp F, Garrett RA. Did eukaryotes originate by a fusion event?. Endocytobiosis and Cell Research 1989, 6, 1-25.
  • Zilig W, Klenk HP, Palm P, Puhler G, Gropp F, Garrett RA, Leffers H. The phylogenetic relations of DNA-dependent RNA polymerases of archaebacteria, euraryotes and eubacteriarel. Can J Microbiol 1989, 35, 73-80.
  • Zilig W, Holtz I, Klenk HP, Trent J, Wunderi S, Janekovic D, Imsel E, Haas B. Pyrococcus woesei, sp. nov. an ultra-thermophilic marine archaebacterium, representing a novel order, Thermococcales. Systematic and Applied Microbiology 1987, 9(1-2), 62-70.
  • Klenk HP, Haas B, Schwass V, Zillig W. Hybridization homology:A new parameter for the analysis of phylogenetic relations, demonstrated with the urkingdom of the Archaebacteria. 1986.
  • Zilig W, Gieri A, Schriber G, Wunderi S, Janekovic D, Stetter KO, Klenk HP. The archaebacterium Thermofilum pendens represents a novel genus of the thermophilic, anaerobic sulphur respiring Thermoproteales. Syst Appl Microbial 1983, 4, 79-87.
  • Hezbri K, Ghodhbane-Gtari F, Montero-Calasanz M, Sghaier H, Rohde M, Spröer C, Schumann P, Klenk H-P, Gtari M. Geodermatophilus aquaeductus sp. nov., isolated from the ruins of Hadrian's aqueduct. Antonie van Leeuwenhoek 2015, 108(1), 41-50.
  • Hezbri K, Ghodhbane-Gtari F, Montero-Calasanz MC, Sghaier H, Rohde M, Spröer C, Schumann P, Klenk H-P, Gtari M. Description of Geodermatophilus bullaregiensis sp. nov. Antonie van Leeuwenhoek 2015, 108(2), 415-425.
  • Hezbri K, Ghodhbane-Gtari F, Montero-Calasanz MC, Sghaier H, Rohde M, Schumann P, Klenk H-P, Gtari M. Geodermatophilus sabuli sp. nov., a gamma-radiation-resistant actinobacterium isolated from desert limestone. International Journal of Systematic and Evolutionary Microbiology 2015, 65, 3365-3372.
  • Mohammadipanah F, Hamedi J, Spröer C, Schumann P, Montero-Calasanz MC, Klenk H-P. Saccharothrix ecbatanensis sp. nov., a novel actinobacterium isolated from soil. International Journal of Systematic and Evolutionary Microbiology 2015, 65, 4544-4549.
  • Lahoum A, Bouras N, Mathieu F, Schumann P, Sproer C, Klenk HP, Sabaou N. Actinomadura algeriensis sp nov., an actinobacterium isolated from Saharan soil. Antonie van Leeuwenhoek 2016, 109(1), 159-165.
  • Bell ME, Lasker BA, Klenk HP, Hoyles L, Sproer C, Schumann P, Brown JM. Kroppenstedtia pulmonis sp. nov. and Kroppenstedtia sanguinis sp. nov., isolated from human patients. Antonie van Leeuwenhoek 2016, 109(5), 603-610.
  • Camacho M, Montero-Calasanz MC, Redondo-Gómez S, Rodríguez-Llorente I, Schumann P, Klenk HP. Microbulbifer rhizosphaerae sp. nov., isolated from the rhizosphere of the halophyte Arthrocnemum macrostachyum. International Journal of Systematic and Evolutionary Microbiology 2016, 66, 1844-1850.
  • Veyisoglu A, Carro L, Guven K, Cetin D, Sproer C, Schumann P, Klenk HP, Goodfellow M, Sahin N. Micromonospora yasonensis sp nov., isolated from a Black Sea sediment. Antonie van Leeuwenhoek 2016, 109(7), 1019-1028.
  • Ercibengoa M, Bell M, Marimom JM, Humrighouse B, Klenk H-P, Potter G, Perez-Trallero E. Nocardia donostiensis sp. nov., isolated from human respiratory specimens. Antonie van Leeuwenhoek 2016, 109(5), 653-660.
  • Ozdemir-Kocak F, Saygin H, Saricaoglu S, Cetin D, Pötter G, Spröer C, Guven K, Isik K, Klenk H-P, Sahin N. Nocardia zapadnayensis sp. nov., isolated from soil. Antonie van Leeuwenhoek 2016, 109(1), 95-103.
  • Akhwale JK, Göker M, Rohde M, Schumann P, Boga HI, Klenk HP. Nocardiopsis mwathae sp.nov., isolated from the haloalkaline Lake Elmenteita in the African Rift Valley. Antonie van Leeuwenhoek 2016, 109(3), 421-430.
  • Mokrane S, Bouras N, Meklat A, Lahoum A, Zitouni A, Verheecke C, Mathieu F, Schumann P, Spröer C, Sabaou N, Klenk H-P. Thermoactinomyces khenchelensis sp.nov., a filamentous bacterium isolated from soil sediment of a terrestrial hot spring. Antonie van Leeuwenhoek 2016, 109(2), 311-317.
  • Spring S, Bunk B, Spröer C, Schumann P, Rohde M, Tindall BJ, Klenk H-P. Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum. The ISME Journal 2016, advance online publication.
  • Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov A, Wisecaver J, Long TM, Aerts AL, Barry K, Choi C, Clum A, Coughlan AY, Deshpande S, Douglass AP, Hanson SJ, Klenk HP, LaButti K, Lapidus A, Lindquist E, Lipzen A, Meier-Kolthoff J, Ohm RA, Otillar RP, Pangilian J, Peng Y, Rokas A, Rosa CA, Scheuner C, Sibirny A, Slot JC, Stielow B, Sun H, Kurtzman CP, Blackwell M, Grigoriev IV, Jeffries TW. Comparative genomics of biotechnologically important yeasts. Proceedings of the National Academy of Sciences of the USA 2016, 113(35), 9882-9887.
  • Panschin I, Huang S, Meier-Kolthoff JP, Tindall BJ, Rohde M, Verbarg S, Lapidus A, Han J, Trong S, Haynes M, Reddy TBK, Huntemann M, Pati A, Ivanova NN, Mavromatis K, Markowitz V, Woyke T, Goker M, Klenk HP, Kyrpides NC, Hahnke RL. Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005. Standards in Genomic Sciences 2016, 11, 37.
  • Kappler U, Davenport K, Beatson S, Lapidus A, Pan CL, Han C, Montero-Calasanz MD, Land M, Hauser L, Rohde M, Goker M, Ivanova N, Woyke T, Klenk HP, Kyrpides NC. Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T). Standards in Genomic Sciences 2016, 11, 38.
  • Kanukollu S, Voget S, Pohlner M, Vandieken V, Petersen J, Kyrpides NC, Woyke T, Shapiro N, Goker M, Klenk HP, Cypionka H, Engelen B. Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment. Standards in Genomic Sciences 2016, 11.
  • Aizenberg-Gershtein Y, Izhaki I, Lapidus A, Copeland A, Reddy TBK, Huntemann M, Pillay M, Markowitz V, Goker M, Woyke T, Klenk H-P, Kyrpides NC, Halpern M. High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods. Standards in Genomic Sciences 2016, 11(4).
  • Tashkandy N, Sabban S, Fakieh M, Meier-Kolthoff JP, Huang SX, Tindall BJ, Rohde M, Baeshen MN, Baeshen NA, Lapidus A, Copeland A, Pillay M, Reddy TBK, Huntemann M, Pati A, Ivanova N, Markowitz V, Woyke T, Goker M, Klenk HP, Kyrpides NC, Hahnke RL. High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T. Standards in Genomic Sciences 2016, 11, 42.
  • Singer E, Bushnell B, Coleman-Derr D, Bowman B, Bowers RM, Levy A, Gies EA, Cheng J-F, Copeland A, Klenk H-P, Hallam SJ, Hugenholtz P, Tringe SG, Woyke T. High-resolution phylogenetic microbial community profiling. The ISME Journal 2016, 10(8), 2020-2032.
  • Federhen S, Rosello-Mora R, Klenk H-P, Tindall BJ, Konstantinidis KT, Whitman WB, Brown D, Labeda D, Ussery D, Garrity M, Colwell RR, Hasan N, Graf J, Parte A, Yarza P, Goldberg B, Sichtig H, Karsch-Mizrachi I, Clark K, McVeigh R, Pruitt KD, Tatusova T, Falk R, Turner S, Madden T, Kitts P, Kimchi A, Klimke W, Agarwala R, DiCuccio M, Ostell J. Meeting report: Genbank microbial genomic taxonomy workshop (12-13 May 2015). Standards in Genomic Sciences 2016, 11(15).
  • Mwirichia R, Alan I, Rashid M, Vinu M, Ba-Alawi W, Kamau AA, Ngugi DK, Göker M, Klenk H-P, Bajic VB, Stingl U. Metabolic traits of an uncultured archaeal lineage - MSBL1 - from brine pools of the Red Sea. Scientific Reports 2016, 6, 19181.
  • Menendez E, Ramirez-Bahena MH, Carro L, Fernandez-Pascual M, Klenk HP, Velazquez E, Mateos PF, Peix A, Scotti MR. Paenibacillus periandrae sp nov., isolated from nodules of Periandra mediterranea. International Journal of Systematic and Evolutionary Microbiology 2016, 66(4), 1838-1843.
  • Sghaier H, Hezbri K, Ghodhbane-Gtari F, Pujic P, Sen A, Daffonchio D, Boudabous A, Tisa LS, Klenk H-P, Armengaud J, Normand P, Gtari M. Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes. The ISME Journal 2016, 10, 21-29.
  • Boubetra D, Bouras N, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HP. Streptosporangium algeriense sp nov., an actinobacterium isolated from desert soil. International Journal of Systematic and Evolutionary Microbiology 2016, 66, 1034-1038.
  • Chaouch FC, Bouras N, Mokrane S, Zitouni A, Schumann P, Spröer C, Sabaou N, Klenk H-P. Streptosporangium saharense sp. nov., an actinobacterium isolated from Saharan soil. International Journal of Systematic and Evolutionary Microbiology 2016, 1-29.
  • Barka EA, Vatsa P, Sanchez L, Gaveau-Vaillant N, Jacquard C, Klenk HP, Clement C, Ouhdouch Y, van Wezel GP. Taxonomy, Physiology, and Natural Products of Actinobacteria. Microbiology and Molecular Biology Reviews 2016, 80(1), 1-43.
  • Mokrane S, Bouras N, Meklat A, Lahoum A, Zitouni A, Verheecke C, Mathieu F, Schumann P, Sproer C, Sabaou N, Klenk HP. Thermoactinomyces khenchelensis sp nov., a filamentous bacterium isolated from soil sediment of a terrestrial hot spring. Antonie van Leeuwenhoek 2016, 109(2), 311-317.
  • Boudjlal F, Zitouni A, Bouras N, Schumann P, Spröer C, Sabaou N, Klenk H-P. Actinoalloteichus hoggarensis sp.nov., an actinomycete isolated from Saharan soil. International Journal of Systematic and Evolutionary Microbiology 2015, 65, 2006-2010.
  • Meklat A, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Klenk HP, Sabaou N. Bounagaea algeriensis gen. nov., sp nov., an extremely halophilic actinobacterium isolated from a Saharan soil of Algeria. Antonie van Leeuwenhoek 2015, 108(2), 473-482.
  • Ben-Hania W, Joseph M, Fiebig A, Bunk B, Klenk H-P, Fardeau M-L, Spring S. Caldisalinibacter kiritimatiensis gen. nov., sp. nov., a moderately thermohalophilic thiosulfate-reducing bacterium from a hypersaline microbial mat. Geomicrobiology 2015, 32(3-4), 347-354.
  • Lasker BA, Bell M, Klenk HP, Schumann P, Brown JM. Nocardia arizonensis sp nov., obtained from human respiratory specimens. Antonie Van Leeuwenhoek 2015, 108(5), 1129-1137.
  • Sahin N, Veyisoglu A, Tatar D, Saygin H, Cetin D, Guven K, Klenk H-P, Goodfellow M. Phytomonospora cypria sp. nov., isolated from soil. Antonie van Leeuwenhoek 2015, 108(6), 1425-1432.
  • Lahoum A, Bouras N, Bouznada K, Holtz MD, Spröer C, Klenk H-P, Sabaou N. Saccharothrix sp. ABH26, a new actinobacterial strain from Algerian Saharan soil: Isolation, identification and actimicrobial activity. Journal of Microbiology, Biotechnology and Food Sciences 2015, 4(5), 415-420.
  • Akhwale JK, Göker M, Rohde M, Spröer C, Schumann P, Klenk H-P, Boga HI. Streptomyces alkaliphilus sp. nov., isolated from sediments of Lake Elmenteita in the Kenyan Rift Valley. Antonie van Leeuwenhoek 2015, 107(5), 1249-1259.
  • Makonde HM, Mwirichia R, Osiemo Z, Boga HI, Klenk H-P. 454 Pyrosequencing-based assessment of bacterial diversity and community structure in termite guts, mounds and surrounding soils. SpringerPlus 2015, 4, 471.
  • Spring S, Scheuner C, Göker M, Klenk H-P. A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data. Frontiers in Microbiology 2015, 6, 281.
  • Meklat A, Bouras N, Mokrane S, Zitouni A, Schumann P, Spröer C, Klenk H-P, Sabaou N. Bounagaea algeriensis gen.nov., sp.nov., an extremely halophilic actinobacterium isolated from a Saharan soil of Algeria. Antonie van Leeuwenhoek 2015, 108, 473-482. In Preparation.
  • Dekio I, Culak R, Misra R, Gaulton T, Fang M, Sakamoto M, Ohkuma M, Oshima K, Hattori M, Klenk H-P, Rajendram D, Gharbia SE, Shah HN. Dissecting the taxonomic heterogeneity within Propionibacterium acnes: proposal for Propionibacterium acnes subsp. acnes subsp. nov. and Propionibacterium acnes subsp. elongatum subsp. nov. International Journal of Systematic and Evolutionary Microbiology 2015, 65(12), 4776-4787.
  • Saker R, Meklat A, Bouras N, Zitouni A, Mathieu F, Spröer C, Klenk H-P, Sabaou N. Diversity and antagonistic properties of culturable halophilic actinobacteria in soils of two arid regions of septentrional Sahara:M'zab and Zibans. Annals of Microbiology 2015, 65(4), 2241-2253.
  • Riedel T, Spring S, Fiebig A, Scheuner C, Petersen J, Goker M, Klenk H-P. Genome sequence of the Roseovarius mucosus type strain (DSM 17069T), a bacteriochlorophyll a-containing representative of the marine Roseobacter group isolated from the dinoflagellate Alexandrium ostenfeldii . Standards in Genomic Sciences 2015, 10, 17.
  • Lau SCK, Riedel T, Fiebig A, Han J, Huntemann M, Petersen J, Ivanova NN, Markowitz V, Woyke T, Goker M, Kyrpides NC, Klenk H-P, Qian P-Y. Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701-009PT), a representative of the Roseobacter group. Standards in Genomic Sciences 2015, 10, 51.
  • Whitman B, Woyke T, Klenk H-P, Zhou Y, Lilburn TG, Beck BJ, DeVos P, Vandamme P, Eisen JA, Garrity G, Hugenholtz P, Kyrpides NC. Genomic Encyclopedia of bacterial and archaeal type strains, Phase III: the genomes of soil and plant-associated and newly described type strains. Standards in Genomic Sciences 2015, 10, 26.
  • Oberhardt MA, Zarecki R, Gronow S, Lang E, Klenk H-P, Gophna U, Ruppin E. Harnessing the landscape of microbial culture media to predict new organism-media pairings. Nature Communications 2015, 6, 8493.
  • Spring S, Brinkmann N, Murrja M, Spröer C, Reitner J, Klenk H-P. High diversity of culturable prokaryotes in a Lithifying hypersaline microbial mat. Geomicrobiology Journal 2015, 32(3-4), 332-346.
  • Sakamoto M, Lapidus AL, Han J, Trong S, Haynes M, Reddy TBK, Mikhailova N, Huntemann M, Pati A, Ivanova N, Pukall R, Markowitz VM, Woyke T, Klenk H-P, Kyrpides NC, Ohkuma M. High quality draft genome sequence of Bacteroides barnesiae type strain BL2T (DSM 18169T) from chicken caecum. Standards in Genomic Sciences 2015, 10, 48.
  • Laviad S, Laidus A, Han J, Haynes M, Reddy TBK, Huntemann M, Pati A, Ivanova N, Mavromatis K, Lang E, Rohde M, Markowitz V, Woyke T, Klenk H-P, Kyrpides NC, Halpern M. High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884T) isolated from a Chironomus sp. egg mass. Standards in Genomic Science 2015, 10(29).
  • Yassin AF, Lapidus A, Han J, Reddy TBK, Huntemann M, Pati A, Ivanova N, Markowitz V, Woyke T, Klenk HP, Kyrpides NC. High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T). Standards in Genomic Sciences 2015, 10, 50.
  • Hahnke RL, Stackebrandt E, Meier-Kolthoff JP, Tindall BJ, Huang S, Rohde M, Lapidus A, Han J, Trong S, Haynes M, Reddy TBK, Huntemann M, Pati A, Ivanova NN, Mavromatis K, Markowitz V, Woyke T, Göker M, Kyrpides NC, Klenk H-P. High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2T (DSM 21788T), a valuable source of polysaccharide decomposing enzymes. Standards in Genomic Sciences 2015, 10, 46.
  • Laviad S, Lapidus A, Copeland A, Redd TBK, Huntemann M, Pati A, Ivanova NN, Markowitz VM, Pukall R, Klenk H-P, Woyke T, Kyrpides NC, Halpern M. High quality draft genome sequence of Leucobacter chironomi strain MM2lBT (DSM 19883T) isolated from a Chironomus sp. egg mass. Standards of Genomic Sciences 2015, 10, 21.
  • McIlroy SJ, Lapidus A, Thomsen TR, Han J, Haynes M, Lobos E, Huntemann M, Pati A, Ivanova NN, Markowitz V, Verbarg S, Woyke T, Klenk H-P, Kyrpides N, Nielsen PH. High quality draft genome sequence of Meganema perideroedes str. Gr1T and a proposal for its reclassification to the family Meganemaceae fam. nov. Standards of Genomic Sciences 2015, 10, 23.
  • Choi DH, Ahn C, Jang GI, Lapidus A, Han J, Reddy TBK, Huntemann M, Pati A, Ivanova N, Markowitz V, Rohde M, Tindall B, Goker M, Woyke T, Klenk HP, Kyrpides NC, Cho BC. High-quality draft genome sequence of Gracilimonas tropica CL-CB462T (DSM 19535T), isolated from a Synechococcus culture. Standards in Genomic Science 2015, 10, 98.
  • Ntougias S, Lapidus A, Copeland A, Reddy TBK, Pati A, Ivanova NN, Markowitz VM, Klenk H-P, Woyke T, Fasseas C, Kyrpides NC, Zervakis GI. High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea. Standards in Genomic Sciences 2015, 10, 52.
  • Li Yong, Zhang Y-J, Ma Y-C, ong Z-L, Jia M, Tian F, Klenk H-P, Tang S-K. Jonesia Luteola sp.nov., a bacterium isolated from Xinjiang Province, China. Antonie van Leeuwenhoek 2015, 108(3), 611-618.
  • Montero-Calasanz MC, Göker M, Broughton WJ, Cattaneo A, Favet J, Pötter G, Rohde M, Spröer C, Schumann P, Klenk HP, Gorbushina AA. Geodermatophilus tzadiensis sp. nov., a UV radiation-resistant bacterium isolated from sand of the Saharan desert. Systematic and Applied Microbiology 2013, 36(3), 177-182.
  • Zaparty M, Esser D, Gertig S, Haferkamp P, Kouril T, Manica A, Pham TK, Reimann J, Schreiber K, Sierocinski P, van Wolferen M, vonJan M, Wieloch P, Albers SV, Driessen AJM, Klenk H-P, Schleper C, Schomburg D, van der Oost J, Wright PC, Siebers B. "Hot standards” for the thermoacidophilic archaeon Sulfolobus solfataricus. Extremophiles 2010, 14(1), 119-142.
  • Albers SV, Birkeland NK, Driessen AJ, Gertig S, Haferkamp P, Klenk HP, Kouril T, Manica A, Pham TK, Ruoff P, Schleper C, Schomburg D, Sharkey KJ, Siebers B, Sierocinski P, Steuer R, Oost J, Westerhoff HV, Wieloch P, Wright PC, Zaparty M. SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation. Biochemical Society Transactions 2009, 37(1), 58-64.
  • Bouznada K, Bouras N, Schumann P, Spröer C, Sabaou N, Klenk HP. Actinophytocola algeriensis sp. nov., an actinobacterium isolated from Saharan soil. International Journal of Systematic and Evolutionary Microbiology 2016, 66, 2760-2765.
  • Chaouch FC, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HP. Streptosporangium becharense sp nov., an actinobacterium isolated from desert soil. International Journal of Systematic and Evolutionary Microbiology 2016, 66, 2484-2490.
  • Lahoum A, Bouras N, Verheecke C, Mathieu F, Schumann P, Sproer C, Klenk HP, Sabaou N. Actinomadura adrarensis sp nov., an actinobacterium isolated from Saharan soil. International Journal of Systematic and Evolutionary Microbiology 2016, 66, 2724-2729.
  • Peña A, Busquets A, Gomila M, Mulet M, Gomila RM, Reddy TBK, Huntemann M, Pati A, Ivanova N, Markowitz V, García-Valdés E, Göker M, Woyke T, Klenk HP, Kyrpides N, Lalucat J. High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains. Standards in Genomic Sciences 2016, 11(55).
  • Jiao JY, Carro L, Liu L, Gao XY, Zhang XT, Hozzein WN, Lapidus A, Huntemann M, Reddy TBK, Varghese N, Hadjithomas M, Ivanova NN, Göker M, Pillay M, Eisen JA, Woyke T, Klenk HP, Kyrpides NC, Li WJ. Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds. Standards in Genomic Sciences 2017, 12, 21.
  • Kublanov IV, Sigalova OM, Gavrilov SN, Lebedinsky AV, Rinke C, Kovaleva O, Chernyh NA, Ivanova N, Daum C, Reddy BK, Klenk HP, Spring S, Goker M, Reva ON, Miroshnichenko ML, Kyrpides NC, Woyke T, Gelfand MS, Bonch-Osmolovskaya EA. Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota. Frontiers in Microbiology 2017, 8, 195.
  • Nouioui I, Goker M, Carro L, Montero-Calasanz MD, Rohde M, Woyke T, Kyrpides NC, Klenk HP. High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea. Standards in Genomic Sciences 2017, 12, 4.
  • Chaouch FC, Bouras N, Mokrane S, Bouznada K, Zitouni A, Potter G, Sproer C, Klenk HP, Sabaou N. Planomonospora algeriensis sp nov., an actinobacterium isolated from a Saharan soil of Algeria. Antonie van Leeuwenhoek 2017, 110(2), 245-252.
  • Hezbri K, Louati M, Nouioui I, Gtari M, Rohde M, Spröer C, Schumann P, Klenk HP, Ghodhbane-Gtari F, Montero-Calasanz MdC. Blastococcus capsensis sp. nov., isolated from an archaeological Roman pool and emended description of the genus Blastococcus, B. aggregatus, B. saxobsidens, B. jejuensis and B. endophyticus. International Journal of Systematic and Evolutionary Microbiology 2016, 66(11), 4864-4872.
  • Kohn T, Heuer A, Jogler M, Vollmers J, Boedeker C, Bunk B, Rast P, Borchert D, Glockner I, Freese HM, Klenk HP, Overmann J, Kaster AK, Rohde M, Wiegand S, Jogler C. Fuerstia marisgermanicae gen. nov., sp nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea. Frontiers in Microbiology 2016, 7, 2079.
  • Bouznada K, Bouras N, Mokrane S, Chaouch FC, Zitouni A, Potter G, Sproer C, Klenk HP, Sabaou N. Saccharothrix isguenensis sp nov., an actinobacterium isolated from desert soil. International Journal of Systematic and Evolutionary Microbiology 2016, 66, 4785-4790.
  • Lahoum A, Aouiche A, Bouras N, Verheecke C, Klenk HP, Sabaou N, Mathieu F. Antifungal activity of a Saharan strain of Actinomadura sp ACD1 against toxigenic fungi and other pathogenic microorganisms. Journal of Medical Mycology 2016, 26(3), 193-200.
  • Singer E, Andreopoulos B, Bowers RM, Lee J, Deshpande S, Chiniquy J, Ciobanu D, Klenk HP, Zane M, Daum C, Clum A, Cheng JF, Copeland A, Woyke T. Data Descriptor: Next generation sequencing data of a defined microbial mock community. Scientific Data 2016, 3, 160081.
  • Strepis N, Sanchez-Andrea I, van Gelder AH, van Kruistum H, Shapiro N, Kyrpides N, Goker M, Klenk HP, Schaap P, Stams AJM, Sousa DZ. Description of Trichococcus ilyis sp. nov. by combined physiological and in silico genome hybridization analyses. International Journal of Systematic and Evolutionary Microbiology 2016, 66, 3957-3963.
  • Hahnke RL, Meier-Kolthoff JP, García-López M, Mukherjee S, Huntemann M, Lvanova NN, Woyke T, Kyrpides NC, Klenk HP, Göker M. Genome-Based Taxonomic Classification of Bacteroidetes. Frontiers in Microbiology 2016, 7, 2003.
  • Hezbri K, Ghodhbane-Gtari F, Montero-Calasanz MD, Nouioui I, Rohde M, Spoer C, Schumann P, Klenk HP, Gtari M. Geodermatophilus pulveris sp nov., a gamma-radiation-resistant actinobacterium isolated from the Sahara desert. International Journal of Systematic and Evolutionary Microbiology 2016, 66, 3828-3834.
  • Camacho M, Redondo-Gomez S, Rodriguez-Llorente I, Rohde M, Sproer C, Schumann P, Klenk HP, Montero-Calasanz MD. Labrenzia salina sp nov., isolated from the rhizosphere of the halophyte Arthrocnemum macrostachyum. International Journal of Systematic and Evolutionary Microbiology 2016, 66, 5173-5180.
  • Veyisoglu A, Carro L, Cetin D, Guven K, Spröer C, Pötter G, Klenk H-P, Sahin N, Goodfellow M. Micromonospora profundi sp. nov., isolated from deep marine sediment. International Journal of Systematic and Evolutionary Microbiology 2016, 66, 4735-4743.
  • Franca L, Albuquerque L, Zhang DC, Nouioui I, Klenk HP, da Costa MS, Margesin R. Nakamurella silvestris sp nov., an actinobacterium isolated from alpine forest soil. International Journal of Systematic and Evolutionary Microbiology 2016, 66, 5460-5464.
  • Nouioui I, Ghodhbane-Gtari F, Montero-Calasanz MD, Goker M, Meier-Kolthoff JP, Schumann P, Rohde M, Goodfellow M, Fernandez MP, Norrnand P, Tisa LS, Klenk HP, Gtari M. Proposal of a type strain for Frankia alni (Woronin 1866) Von Tubeuf 1895, emended description of Frankia alni, and recognition of Frankia casuarinae sp nov and Frankia elaeagni sp nov. International Journal of Systematic and Evolutionary Microbiology 2016, 66(12), 5201-5210.
  • Barka EA, Vatsa P, Sanchez L, Gaveau-Vaillant N, Jacquard C, Meier-Kolthoff JP, Klenk HP, Clement C, Ouhdouch Y, van Wezel GP. Taxonomy, Physiology, and Natural Products of Actinobacteria (vol 80, pg 1, 2016). Microbiology and Molecular Biology Reviews 2016, 80(4), III-III.
  • Belda E, van Heck RGA, Lopez-Sanchez MJ, Cruveiller S, Barbe V, Fraser C, Klenk HP, Petersen J, Morgat A, Nikel PI, Vallenet D, Rouy Z, Sekowska A, dos Santos VAPM, de Lorenzo V, Danchin A, Medigue C. The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis. Environmental Microbiology 2016, 18(10), 3403-3424.
  • Ay H, Nouioui I, Del Carmen Montero-Calasanz M, Carro L, Klenk H-P, Goodfellow M, Igual JM, Cetin D, Sahin N, Isik K. Actinomadura alkaliterrae sp. nov., isolated from an alkaline soil. Antonie van Leeuwenhoek 2017, 110(6), 787-794.
  • Hezbri K, Nouioui I, Rohde M, Schumann P, Gtari M, Klenk H-P, Montero-Calasanz MC, Ghodhbane-Gtari F. Blastococcus colisei sp. nov, isolated from an archaeological amphitheatre. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology 2017, 110(3), 339-346.
  • Menendez E, Perez-Yepes J, Carro L, Fernandez-Pascual M, Ramirez-Bahena M-H, Klenk H-P, Barrios ML, Peix A, Velazquez E. Brevundimonas canariensis sp. nov., isolated from roots of Triticum aestivum. International Journal of Systematic and Evolutionary Microbiology 2017, 67(4), 969-973.
  • Nouioui I, Del Carmen Montero-Calasanz M, Ghodhbane-Gtari F, Rohde M, Tisa LS, Klenk H-P, Gtari M. Frankia discariae sp. nov.: an infective and effective microsymbiont isolated from the root nodule of Discaria trinervis. Archives of Microbiology 2017, 199(5), 641-647.
  • Nouioui I, Ghodhbane-Gtari F, del Carmen Montero-Calasanz M, Rohde M, Tisa LS, Gtari M, Klenk H-P. Frankia inefficax sp. nov., an actinobacterial endophyte inducing ineffective, non nitrogen-fixing, root nodules on its actinorhizal host plants. Antonie van Leeuwenhoek 2017, 110(3), 313-320.
  • Nouioui I, Gtari M, Goker M, Ghodhbane-Gtari F, Tisa LS, Fernandez MP, Normand P, Huntemann M, Clum A, Pillay M, Varghese N, Reddy TBK, Ivanova N, Woyke T, Kyrpides NC, Klenk H-P. Draft genome sequence of Frankia strain G2, a nitrogen-fixing actinobacterium isolated from Casuarina equisetifolia and able to nodulate actinorhizal plants of the order Rhamnales. Genome Announcements 2016, 4(3), e00437-16.
  • Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk H-P, Goker M, Goodfellow M. Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential. Scientific Reports 2018, 8, 525.
  • Carro L, Razmilic V, Nouioui I, Richardson L, Pan C, Golinska P, Asenjo JA, Bull AT, Klenk H-P, Goodfellow M. Hunting for cultivable Micromonospora strains in soils of the Atacama Desert. Antonie van Leeuwenhoek 2018, Epub ahead of print.
  • Nouioui I, Ruckert C, Willemse J, van Wezel GP, Klenk H-P, Busche T, Kalinowski J, Bredholt H, Zotchev SB. Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation. Antonie van Leeuwenhoek 2017, 110(12), 1705-1717.
  • Nouioui I, Carro L, Teramoto K, Igual JM, Jando M, Montero-Calasanz MC, Sutcliffe I, Sangal V, Goodfellow M, Klenk H-P. Mycobacterium eburneum sp. nov., a non-chromogenic, fast-growing strain isolated from sputum. International Journal of Systematic and Evolutionary Microbiology 2017, 67(9), 3174-3181.
  • Ay H, Nouioui I, Del Carmen Montero-Calasanz M, Klenk H-P, Isik K, Cetin D, Sahin N. Streptomyces sediminis sp. nov. isolated from crater lake sediment. Antonie van Leeuwenhoek 2018, 111(4), 493-500.
  • Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, Hugenholtz P, Pati A, Ivanova NN, Woyke T, Klenk HP, Kyrpides NC. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology 2017, 35, 676-683.
  • Jiao J-Y, Salam N, Liu L, Rao MPN, Zhang X-T, Fang B-Z, Han M-X, Zhang Z-T, Chen J, Zhao J, Zhou Y, Alkhalifah DHM, Liu Q, Xiao M, Klenk H-P, Li W-J. Genome sequence and comparative analysis of Jiangella alba YIM 61503T isolated from a medicinal plant Maytenus austroyunnanensis. Antonie van Leeuwenhoek 2018, 111(5), 667-678.
  • Simon M, Scheuner C, Meier-Kolthoff JP, Brinkhoff T, Wagner-Döbler I, Ulbrich M, Klenk HP, Schomburg D, Petersen J, Göker M. Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats. The ISME Journal 2017, 11, 1483–1499.
  • Hezbri K, Nouioui I, Rohde M, Sproer C, Schumann P, Gtari M, Klenk H-P, Montero-Calasanz MDC, Ghodhbane-Gtari F. Blastococcus xanthinilyticus sp. Nov., isolated from monument. International Journal of Systematic and Evolutionary Microbiology 2018, 68(4), 1177-1183.
  • Nouioui I, Ghodhbane-Gtari F, Klenk H-P, Gtari M. Frankia saprophytica sp. Nov., an atypical, non-infective (Nod-) and non-nitrogen fixing (Fix-) actinobacterium isolated from Coriaria nepalensis root nodules. International Journal of Systematic and Evolutionary Microbiology 2018, 68(4), 1090-1095.
  • Saricaoglu S, Nouioui I, Ay H, Saygin H, Bektas KI, Guven K, Cetin D, Klenk H-P, Isik K, Sahin N. Nonomuraea insulae sp. nov., isolated from forest soil. Antonie van Leeuwenhoek 2018, Epub ahead of print.
  • Riesco R, Carro L, Roman-Ponce B, Prieto C, Blom J, Klenk H-P, Normand P, Trujillo ME. Defining the species Micromonospora saelicesensis and Micromonospora noduli under the framework of genomics. Frontiers in Microbiology 2018, 9, 1360.
  • Nouioui I, Carro L, Sangal V, Jando M, Igual JM, Goodfellow M, Klenk H-P. Formal description of Mycobacterium neglectum sp. nov. and Mycobacterium palauense sp. nov., rapidly growing actinobacteria. Antonie van Leeuwenhoek 2018, Epub ahead of print.
  • Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge JA, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvociute M, Hansen LH, Sorensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Kang DD, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC. Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods 2017, 14(11), 1063–1071.