IAFRI Staff
Dr Thomas Howard
Reader in Synthetic and Molecular Biology
- Address: Molecular Life Sciences,
School of Natural and Environmental Sciences,
Devonshire Building,
Newcastle University,
Newcastle-Upon-Tyne,
NE1 7RU, UK
Biography
Dr Thomas Howard is Reader in Synthetic and Molecular Biology at Newcastle University. He earned his PhD in Plant Molecular Biology and Biochemistry from the University of Sheffield, where he used transgenic techniques to investigate carbon source–sink relationships in plants. He subsequently carried out postdoctoral research on plant metabolism at the University of Essex and the John Innes Centre, before changing focus to microbial metabolism at the University of Exeter. In 2015, he established his own research group at Newcastle University. His team applies a range of techniques - including metabolic engineering, cell-free systems, laboratory automation, and statistical Design of Experiments - to develop biology-inspired metabolic pathways, smart materials, and biosensors. He has secured significant funding from the BBSRC, EPSRC, and Dstl to support innovations in cell-free diagnostics and programmable biological materials.
Dr Howard is a committed advocate of student-led research. He has supervised undergraduate research projects and Nuffield Research Placement students in this fashion, and in 2012 led the University of Exeter’s inaugural entry into the international iGEM synthetic biology competition. He remained involved with iGEM both at Exeter and Newcastle for many years afterwards. In recognition of his contributions to teaching and student support, he was made a Fellow of the Higher Education Academy in 2018.
Qualifications
- Fellow of the Higher Education Academy
- Associate Fellow of the Higher Education Academy
- PhD: Plant Molecular Biology and Biochemistry (University of Sheffield)
- BSc (Hons) in Botany and Zoology (University of Reading)
Roles and Responsibilities
- Culture and Inclusion (formerly Equality, Diversity and Inclusion) Committee Member (2024 - present)
- Biology BSc, Stage 2 Co-ordinator (2024 - present)
- European Federation of Biotechnology, Designer Biology 2025 Committee Member (2024 - 2025)
- UKRI-BBSRC Pool of Experts (2023 - present)
- External Examiner for University of Nottingham BSc and MSc degrees in Biotechnology and Plant Sciences (2023 - present)
- Group Lead (2019 - 2023) and Director of Expertise (2022 - 2023) for the Molecular Biology and Biotechnology Research Group (now Molecular Life Sciences)
- Deputy Degree Programme Director (2020 - present): MRes in Biotechnology and Biodesign
- BBSRC STARS Programme: Using virtual experimentation for better experimental design in biological and biotechnological research, Lead-Organiser (2016 - 2019)
- Learning and Teaching Working Group: Links with Industry, 2017
- UK Plant Sciences Federation Translation Working Group Implementation Plan, 2014
- Society for Experimental Biology AGM, ‘Synthetic Biology’ Session Co-Organiser, 30 June - 3 July 2015, Clarion Congress Hotel, Prague.
- Society for Experimental Biology, ‘Synthetic Biology’ Co-Organiser, 8 - 10 January 2014, Charles Darwin House, London.
Awards
Dr Howard was part of the team that was awarded a University of Exeter Impact Award for Outstanding Impact in Technology, and was shortlisted for the BBSRC Innovator of the Year: Most Promising Innovation award in 2014 for work developing petroleum-replica hydrocarbons.
Research Summary
Dr Howard’s research sits at the intersection of metabolic engineering and synthetic biology, underpinned by a long-standing interest in how complex biological systems emerge and can be harnessed for biotechnological innovation. His group employs both cell-free and microbial systems - using molecular biology, biochemistry, small-scale laboratory automation, statistical design of experiments, and mathematical modelling - to engineer biology-inspired metabolic pathways, materials and biosensors. In particular, he applies Design of Experiments and laboratory automation to systematically understand and optimise diverse biological systems. Recent achievements include pioneering the embedding of cell-free protein synthesis (CFPS) systems within macroscale hydrogels and demonstrating that hydrogel-based CFPS can enhance CFPS longevity and support gene regulatory networks. He has authored book chapters on microbial metabolism for next-generation biofuels and more recently contributed to reviews on biosensor development for plant pest surveillance and wastewater epidemiology. In parallel, he has secured significant funding from the BBSRC, EPSRC, and Dstl, leading several UKRI-funded projects at Newcastle University. This includes an EPSRC grant to develop self-disclosing protective materials using synthetic gene networks, and BBSRC awards to develop smart materials for equipment-free molecular identification of insect pests and viral vectors, and to engineer bioprogrammable materials using hydrogel-based CFPS. He has also acted as co-investigator on a number of other UKRI projects.
External links
- GitHub pages for OT-Mation and Mottle scripts
- Google Scholar Profile
- ORCID ID: 0000-0002-5546-4043
Current PhD students
- Katherine Convey (BBSRC DTP, 2023 - 2027)
- Ariadna Vidal I Herrera (EPSRC RENU CDT, 2023 - 2027)
Former PhD Students
- Dr Christopher Azubuike (Commonwealth Scholarship Commission)
- Dr Steve Brown (Shell, University of Exeter, with Steve Aves)
- Dr Jamie Gilman (Shell, University of Exeter, with John Love)
- Dr Catherine Harrison (IAFRI with Fera Ltd)
- Dr Alex Laverick (IAFRI with Fera Ltd)
- Dr Josh Loh (BBSRC)
- Dr Alisa Prusokiene (BBSRC NLD DTP with Fera Ltd)
- Dr Eva Cea Torrescassana (BBSRC NLD DTP)
Former Research Staff
- Dr Christopher Azubuike (BBSRC)
- Dr Alice Banks (EPSRC-Dstl)
- Dr Adokiye Berepiki (BBSRC)
- Dr Charlotte Cook (dstl, University of Exeter)
- Dr Siji Kavil (BBSRC)
- Dr Alex Laverick (BBSRC)
- Dr Colette Whitfield (EPSRC-Dstl)
Academic Collaborations (External Only)
- Dr Rajesh Bommareddy (Northumbria University, Applied Sciences)
- Professor Anastasia Callaghan (University of Portsmouth, Biological Sciences)
- Professor Jonathan Fieldsend (University of Exeter, Computer Sciences)
- Professor Marc Knight (University of Durham, Biosciences)
- Professor Luning Liu (University of Liverpool, Institute of Systems, Molecular and Integrative Biology)
- Professor John Love (University of Exeter, Biosciences)
- Dr Maria del Carmen Montero-Calasanz (IFAPA Las Torres, Junta de Andalucía)
- Dr Jose Munoz (Northumbria University, Applied Sciences)
- Professor Susan Seal (University of Greenwich, Natural Resources Institute)
- Dr Gonçalo Silva (University of Greenwich, Natural Resources Institute)
Modules (2024/2025)
- Biotechnology: Advanced Topics (Masters): Module Lead
- Biotechnology: Principles and Practice (Second Year Undergraduate)
- Biological Sciences Research Dissertation Projects (Third Year Undergraduate)
- MSc in Industrial and Commercial Biotechnology, Research Dissertation Projects (Masters)
- MRes in Biotechnology and Biodesign, Research Dissertation Projects (Masters)
- Academic and Professional Skills for the Biosciences (First Year Undergraduate)
Previous years
- Bioprospecting: Biological and Chemical Diversity of Endophytes (2016-2022, Second and Third Year Undergraduate): Module Lead
- Biotechnology: Applications (2016-2022, Third Year Undergraduate)
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Articles
- Laverick A, Convey K, Harrison C, Tomlinson J, Stach J, Howard TP. OT-Mation: an open-source code for parsing CSV files into Python scripts for control of OT-2 liquid-handling robotics. Synthetic Biology 2025, 10(1).
- Vidal A, Mohiuddin O, Chance E, Serrano-Blanco S, Howard TP, Muñoz-Muñoz J, Velasquez-Orta S, Rios-Solis L. Biohydrogen production through dark fermentation of agricultural waste: Novel strain and feedstock characterisation. Bioresource Technology 2025. In Press.
- Cea-Torrescassana E, Howard TP, Stach J, Montero-Calasanz MdC. Whole-genome sequence of the plant-associated bacterium Pseudomonas granadensis CT364 isolated in Seville, Spain. Microbiology Resource Announcements 2024, 13(6), e00735-23.
- Prusokiene A, Boonham N, Fox A, Howard TP. Mottle: Accurate pairwise substitution distance at high divergence through the exploitation of short-read mappers and gradient descent. PLoS ONE 2024, 19(3), e0298834.
- Kavil S, Laverick A, Whitfield CJ, Banks AM, Howard TP. Methods for Embedding Cell-Free Protein Synthesis Reactions in Macro-Scale Hydrogels. Journal of Visualized Experiments 2023, 196, e65500.
- Banks AM, Whitfield CJ, Brown SR, Fulton DA, Goodchild SA, Grant C, Love J, Lendrem D, Fieldsend JE, Howard TP. Key reaction components affect the kinetics and performance robustness of cell-free protein synthesis reactions. Computational and Structural Biotechnology Journal 2022, 20, 218-229.
- Azubuike CC, Gatehouse AMR, Howard TP. pCAT vectors overcome inefficient electroporation of Cupriavidus necator H16. New Biotechnology 2021, 65, 20-30.
- Whitfield CJ, Banks AM, Dura G, Love J, Fieldsend JE, Goodchild SA, Fulton DA, Howard TP. Cell-free protein synthesis in hydrogel materials. Chemical Communications 2020, 56(52), 7108-7111.
- Azubuike CC, Edwards MG, Gatehouse AMR, Howard TP. Applying Statistical Design of Experiments (DOE) To Understanding the Effect of Growth Media Components on Cupriavidus necator H16 Growth. Applied and Environmental Microbiology 2020, 86(17), e00705-20.
- Gilman J, Singleton C, Tennant RK, James PBC, Howard TP, Lux T, Parker DA, Love J. Rapid, Heuristic Discovery and Design of Promoter Collections in Non-Model Microbes for Industrial Applications. ACS Synthetic Biology 2019, 8(5), 1175-1186.
- Fellermann H, Shirt-Ediss B, Kozyra J, Linsley M, Lendrem D, Isaacs J, Howard TP. Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists. Pharmaceutical Statistics 2019, 18(4), 402-406.
- Brown SR, Staff M, Lee R, Love J, Parker DA, Aves SJ, Howard TP. Design of Experiments Methodology to Build a Multifactorial Statistical Model Describing the Metabolic Interactions of Alcohol Dehydrogenase Isozymes in the Ethanol Biosynthetic Pathway of the Yeast Saccharomyces cerevisiae. ACS Synthetic Biology 2018, 7(7), 1676-1684.
- Sambles CM, Salmon DL, Florance H, Howard TP, Smirnoff N, Nielsen LR, McKinney LV, Kjær ED, Buggs RJA, Studholme DJ, Grant M. Ash leaf metabolomes reveal differences between trees tolerant and susceptible to ash dieback disease. Scientific Data 2017, 4, 170190.
- Howard TP, Fahy B, Leigh F, Howell P, Powell W, Greenland A, Trafford K, Smith AM. Use of advanced recombinant lines to study the impact and potential of mutations affecting starch synthesis in barley. Journal of Cereal Sciences 2014, 59(2), 196-202.
- Howard TP, Middelhaufe S, Moore K, Edner C, Kolak DM. Synthesis of customized petroleum-replica fuel molecules by targeted modification of fatty free acid pools in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 2013, 110(19), 7636-7641.
- Howard TP, Fahy B, Craggs A, Mumford R, Leigh F. Barley mutants with low rates of endosperm starch synthesis have low grain dormancy and high susceptibility to preharvest sprouting. The New Phytologist 2012, 194(1), 158-67.
- Howard TP, Lloyd JC, Raines CA. Inter-species variation in the oligomeric states of the higher plant Calvin cycle enzymes glyceraldehyde-3-phosphate dehydrogenase and phosphoribulokinase. Journal of Experimental Botany 2011, 62(11), 3799-805.
- Howard T, Rejab NA, Griffiths S, Leigh F, Leverington-Waite M. Identification of a major QTL controlling the content of B-type starch granules in Aegilops. Journal of Experimental Botany 2011, 62(2), 2217-28.
- Howard TP, Upton GJ, Lloyd JC, Raines CA. Antisense suppression of the small chloroplast protein CP12 in tobacco: a transcriptional viewpoint. Plant Signaling and Behaviour 2011, 6(12), 2026-30.
- Howard TP, Fryer MJ, Singh P, Metodiev M, Lytovchenko A. Antisense suppression of the small chloroplast protein CP12 in tobacco alters carbon partitioning and severely restricts growth. Plant Physiology 2011, 157(2), 620-31.
- Howard TP, Metodiev M, Lloyd JC, Raines CA. Thioredoxin-mediated reversible dissociation of a stromal multiprotein complex in response to changes in light availability. Proceedings of the National Academy of Sciences of the United States of America 2008, 105(10), 4056-4061.
- Overy SA, Walker HJ, Malone S, Howard TP, Baxter CJ. Application of metabolite profiling to the identification of traits in a population of tomato introgression lines. Journal of Experimental Botany 2005, 54(410), 287-96.
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Book Chapters
- Brown S, Loh J, Aves SJ, Howard TP. Alkane Biosynthesis in Bacteria. In: Stams, AJM; Sousa, D, ed. Biogenesis of Hydrocarbons. Cham: Springer, 2018, pp.1-20.
- Howard TP. Engineering Microbial Metabolism for Biofuel Production. In: Love, J; Bryant, JA, ed. Biofuels and Bioenergy. Chichester: Wiley-Blackwell, 2017, pp.241-260.
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Reviews
- Azubuike CC, Couceiro F, Robson SC, Piccinni MZ, Watts JEM, Williams JB, Callaghan AJ, Howard TP. Developing Biosensors for SARS-CoV-2 Wastewater-Based Epidemiology: A Systematic Review of Trends, Limitations and Future Perspectives. Sustainability 2022, 14(24), 16761.
- Silva G, Tomlinson J, Onkokesung N, Sommer S, Mrisho L, Legg J, Adams IP, Gutierrez-Vazquez Y, Howard TP, Laverick A, Hossain O, Wei Q, Gold KM, Boonham N. Plant pest surveillance: from satellites to molecules. Emerging Topics in Life Sciences 2021, 5(2), 275-287.
- LopezCalcagno PE, Howard TP, Raines CA. The CP12 protein family: a thioredoxin-mediated metabolic switch?. Frontiers in Plant Science 2014, 5, 9.
- Singleton C, Howard TP, Smirnoff N. Synthetic metabolons for metabolic engineering. Journal of Experimental Botany 2014, 65(8), 1-8.